PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim03g111470.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NF-YC | ||||||||
Protein Properties | Length: 274aa MW: 29746.3 Da PI: 8.0809 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 108.9 | 3e-34 | 53 | 139 | 1 | 84 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavt 84 ql+ fw++q i + df+ h+lP+ rikki+k+d++v+misae+P+ll kacelfi elt rswl+a+e++rrtlkk d +++ + Sopim03g111470.0.1 53 QLQLFWAAQlqeIMQIGDFEGHSLPIFRIKKIMKSDKEVRMISAESPILLDKACELFIQELTHRSWLKAQECQRRTLKKIDFFTTEE 139 89*****9976777899***************************************************************9887655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.92E-18 | 61 | 134 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.0E-24 | 70 | 133 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.5E-16 | 75 | 133 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MASHSDPMAA NVEVATSVNA EAAAAAVNVK AVAVAEATAQ PVVNANNYLL QQQLQLFWAA 60 QLQEIMQIGD FEGHSLPIFR IKKIMKSDKE VRMISAESPI LLDKACELFI QELTHRSWLK 120 AQECQRRTLK KIDFFTTEEE APTYVPGMLG NIPNHIPYCY SPMGPPAPPM APLAPSMGPP 180 APSMEPPAPS MPAPPRGIMG RRAMPWVTTS MHVPPPLYPR QFGWYAAGDN PYATRGSSGQ 240 GSGDPQSGMM EPPRLIGYRM ISKPSGAIWR SGH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 6e-24 | 60 | 133 | 2 | 75 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975515 | 0.0 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027771200.1 | 1e-133 | nuclear transcription factor Y subunit C-1-like | ||||
TrEMBL | A0A3Q7FNU8 | 1e-105 | A0A3Q7FNU8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g111470.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA27336 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63470.2 | 4e-27 | nuclear factor Y, subunit C4 |