PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim03g098200.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 722aa MW: 79358.8 Da PI: 6.7006 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58 | 1.7e-18 | 30 | 85 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++ Le+ F+++++p++++r +L++ l L rq+k+WFqNrR+++k Sopim03g098200.0.1 30 KKRYHRHTANQIQKLEAIFKECPHPDEKTRLQLSRDLALAPRQIKFWFQNRRTQMK 85 678899***********************************************998 PP | |||||||
2 | START | 182.1 | 3.1e-57 | 228 | 453 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....k 78 +a a++el+++++ +ep+W+ks + +n d + + f+++++ ++ea+r+sgvv+m+ lve ++d + +W e ++ k Sopim03g098200.0.1 228 IAGNAMEELIRLVQTSEPLWMKSTidgrDVLNFDSYDRVFPRANShlknpnVRIEASRDSGVVTMNGLALVEVFMDAN-KWHEFFPtivsK 317 67899*******************99999999999999999988899**999**************************.************ PP EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEE CS START 79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghs 162 a tlevissg ++lqlm+ elq+lsplvp R +f+R+++q ++g+w+ivdvS d +q+++ ss ++++lpSg+li++++ng+s Sopim03g098200.0.1 318 ARTLEVISSGvmgsrtSTLQLMYEELQVLSPLVPtRQLYFLRFCQQIEQGSWAIVDVSYDITQENQFSSTACKVHRLPSGCLIQDMPNGYS 408 *****************************************************************98************************ PP EEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 163 kvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 kvtwvehv+++++ h l+r l++sgla+ga +wv tlqr ce+ Sopim03g098200.0.1 409 KVTWVEHVEVEEKGLiHRLYRDLIHSGLAFGAERWVGTLQRVCER 453 **********987555***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.25E-18 | 22 | 90 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.3E-21 | 24 | 91 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.022 | 27 | 87 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.2E-17 | 28 | 91 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.62E-16 | 29 | 88 | No hit | No description |
Pfam | PF00046 | 3.9E-16 | 30 | 85 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 62 | 85 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 48.764 | 218 | 456 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.36E-35 | 219 | 454 | No hit | No description |
CDD | cd08875 | 3.34E-119 | 222 | 452 | No hit | No description |
SMART | SM00234 | 6.8E-50 | 227 | 453 | IPR002913 | START domain |
Pfam | PF01852 | 3.5E-49 | 228 | 453 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.06E-21 | 474 | 711 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 722 aa Download sequence Send to blast |
MEYVGTGGGG GTSSGGGADP HDGSDSHRRK KRYHRHTANQ IQKLEAIFKE CPHPDEKTRL 60 QLSRDLALAP RQIKFWFQNR RTQMKAQHER ADNCALRAEN DKIRCENIAI REALKNVICP 120 SCGGPPVTED SYFDEQKLRI ENMQLKEELD KVSSIAAKYI GRPISQLPPV QPIHLSSLDL 180 SMSSFIGHGP NSLDLDLDLL PGSSSNMPSL AYATLNLSDM DKSLIADIAG NAMEELIRLV 240 QTSEPLWMKS TIDGRDVLNF DSYDRVFPRA NSHLKNPNVR IEASRDSGVV TMNGLALVEV 300 FMDANKWHEF FPTIVSKART LEVISSGVMG SRTSTLQLMY EELQVLSPLV PTRQLYFLRF 360 CQQIEQGSWA IVDVSYDITQ ENQFSSTACK VHRLPSGCLI QDMPNGYSKV TWVEHVEVEE 420 KGLIHRLYRD LIHSGLAFGA ERWVGTLQRV CERHACLMVN SNPSHDHGGA IPSPDGKRSM 480 MKLARRMVSN FCASVNPSNG HQWNTISGLN EFEVRATLQK CTDPGQPNGV VISAAATIWL 540 PIPPQQVFNF FRDERTRPQW DVLSNQNPVQ EVAHIANGSH SGNCISVLRA YNTSQNNMLI 600 LQESCIDSSG ALVVYSPVDI PAINIAMSGE DPTYIPLLPS GFTISPDGRQ LDTDAASCSS 660 SSNASTIGGG RSGGSLITVV FQILVSSLPS AKMSPESVNT VNNLIGSTVH QIKSALNCST 720 S* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC238470 | 0.0 | AC238470.1 Solanum lycopersicum chromosome 3 clone C03HBa0298P15, complete sequence. | |||
GenBank | HG975515 | 0.0 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004235382.1 | 0.0 | homeobox-leucine zipper protein HDG11 | ||||
Swissprot | Q9FX31 | 0.0 | HDG11_ARATH; Homeobox-leucine zipper protein HDG11 | ||||
TrEMBL | A0A2G2X830 | 0.0 | A0A2G2X830_CAPBA; Homeobox-leucine zipper protein HDG12 | ||||
STRING | Solyc03g098200.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2490 | 23 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |