PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim03g083880.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 313aa    MW: 36462.7 Da    PI: 6.8726
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim03g083880.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.92.3e-5481352128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                         ppGfrFhPtdeelv++yLkkk+++++++l +vikev++y++ePwdL++  ++   ee+ewyfFs++dkky+tg+r+nrat++g+Wkatg+d
  Sopim03g083880.0.1   8 PPGFRFHPTDEELVDYYLKKKITSTRIDL-DVIKEVNLYNIEPWDLQElcRIGReEEDEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRD 97 
                         9****************************.9***************954544442555********************************* PP

                 NAM  90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         k+v+s ++ l+g++ktLvfykgrap+g k+dW+mheyrl
  Sopim03g083880.0.1  98 KAVYS-NHDLIGMRKTLVFYKGRAPHGLKSDWIMHEYRL 135
                         *****.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.54E-615156IPR003441NAC domain
PROSITE profilePS5100558.9917156IPR003441NAC domain
PfamPF023653.6E-288135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MNSFSHIPPG FRFHPTDEEL VDYYLKKKIT STRIDLDVIK EVNLYNIEPW DLQELCRIGR  60
EEEDEWYFFS HKDKKYPTGT RTNRATTAGF WKATGRDKAV YSNHDLIGMR KTLVFYKGRA  120
PHGLKSDWIM HEYRLHTDPN GAHQEEGWVV CRVFKKKMAS TRKESEKESP NNNDQVPFMP  180
NHIVSQHNYP CKKELIDNLN YQIQIPSHHH HHQQSPKLVP STSISVYNNL QQSVSLLTRE  240
QVVDQVTDWR VLHKFVASQL SQEEENDYYS NTLHGVTDES NLNKQETVTE NNSTASSCFQ  300
IDLGKYTSLF VD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-50615714169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019068204.20.0NAC domain-containing protein 7
SwissprotQ9FWX21e-111NAC7_ARATH; NAC domain-containing protein 7
TrEMBLA0A3Q7GAJ00.0A0A3Q7GAJ0_SOLLC; Uncharacterized protein
STRINGSolyc03g083880.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62700.12e-96Arabidopsis NAC domain containing protein 26
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]