PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim03g083040.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | Nin-like | ||||||||
Protein Properties | Length: 265aa MW: 31049.2 Da PI: 5.8826 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 83.6 | 1.9e-26 | 151 | 200 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++++le++++yF+ pi++AAkeL v+lTvLK++CR+++I+RWPhRk+ksl Sopim03g083040.0.1 151 DTLELEEIQRYFHVPITKAAKELRVGLTVLKKRCRELNIMRWPHRKLKSL 200 789*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.632 | 134 | 222 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.2E-23 | 152 | 200 | IPR003035 | RWP-RK domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MDVKSQVLDV LKMENQNDHF DWLYSEQEYP PSTFGTLQQD SRLSNGGLLN FEFDPFELPN 60 DLQNNNLPYF GLEEFEEICQ DLGSFDLKSL PSQFQEDNNT LIIHDANVNV MPQNVTHDTL 120 GESQVTTPAF YGDSMEIIQN RNNNRRHKKS DTLELEEIQR YFHVPITKAA KELRVGLTVL 180 KKRCRELNIM RWPHRKLKSL QTLIHNVKEM GLTSEVEMLE EHQRMVERVP EMELTDRTKK 240 LRQTCFKANY KKRRASMAMT ANFY* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975515 | 0.0 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010318117.1 | 0.0 | protein RKD3 | ||||
TrEMBL | K4BI80 | 0.0 | K4BI80_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g083040.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12143 | 19 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53040.1 | 2e-44 | RWP-RK domain-containing protein |