PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim03g082550.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HD-ZIP
Protein Properties Length: 210aa    MW: 24802.8 Da    PI: 5.5028
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim03g082550.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.52.2e-182474656
                        S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                        +ft+eq++ Le++F+   ++  +e+ +LA++lgL+ rqV +WFqN+Ra++k
  Sopim03g082550.0.1 24 RFTDEQVKLLESMFKLGTKIEPREKLKLARELGLQPRQVAIWFQNKRARWK 74
                        7*************************************************9 PP
2HD-ZIP_I/II113.99.7e-3722112393
         HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                          +r+++eqvklLE++F+  +k+ep++K +lareLglqprqva+WFqn+RAR+k+kqlE++y+ L++++d+l+ + e+L++e+e+L  +l++
  Sopim03g082550.0.1  22 AKRFTDEQVKLLESMFKLGTKIEPREKLKLARELGLQPRQVAIWFQNKRARWKSKQLEHEYRLLQSKFDNLNMQFESLKTEKERLLIQLET 112
                         69***********************************************************************************988875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.42E-181078IPR009057Homeodomain-like
PROSITE profilePS5007116.5031676IPR001356Homeobox domain
SMARTSM003896.6E-171880IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.2E-192383IPR009057Homeodomain-like
PfamPF000468.7E-162474IPR001356Homeobox domain
CDDcd000861.27E-132477No hitNo description
PRINTSPR000317.5E-64756IPR000047Helix-turn-helix motif
PROSITE patternPS0002705174IPR017970Homeobox, conserved site
PRINTSPR000317.5E-65672IPR000047Helix-turn-helix motif
PfamPF021832.8E-1276117IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MEPQLDNSEI SNFKKKNKCE NAKRFTDEQV KLLESMFKLG TKIEPREKLK LARELGLQPR  60
QVAIWFQNKR ARWKSKQLEH EYRLLQSKFD NLNMQFESLK TEKERLLIQL ETLNDQLENN  120
NARGSGSQDS REGEMLLHRE LEMKDCSGSR FDHKSVNEED DETREGRDKY FTPKEEAEFW  180
NLEELGDNNS LQHWCVGLAS ISNSKLWDF*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004235006.11e-151homeobox-leucine zipper protein ATHB-7
SwissprotQ651Z58e-36HOX6_ORYSJ; Homeobox-leucine zipper protein HOX6
SwissprotQ9XH358e-36HOX6_ORYSI; Homeobox-leucine zipper protein HOX6
TrEMBLA0A3Q7G9N91e-150A0A3Q7G9N9_SOLLC; Uncharacterized protein
STRINGSolyc03g082550.2.11e-151(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20412363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.13e-38homeobox 7
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]