PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim03g059300.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 228aa MW: 26569.4 Da PI: 9.5083 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 53.7 | 7.2e-17 | 1 | 126 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +G+rFhPtd l+ +yLk+ +g+ +e+ i +diy Pw++ ++ e k yf ++ +k+ +++r +r+ ++g+Wk + ++ Sopim03g059300.0.1 1 MGIRFHPTDTKLI-NYLKRFFKGELSLNQECpILFADIYGDqPPWEIF-GANFEVKYRYFITPLKKRRIKDTRFSRTCAKGMWKGQTGEEL 89 59***********.9*******99855546669999***87368***6.556678899**************************7666677 PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++ g +vg k+ f +++ g++ W++ ey++ Sopim03g059300.0.1 90 IRRNsLGPVVGFKRKCRFE-TSDQCGHNNIWLIIEYQV 126 766546778*********7.799999**********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 24.494 | 1 | 150 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.19E-18 | 2 | 150 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.9E-12 | 2 | 126 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MGIRFHPTDT KLINYLKRFF KGELSLNQEC PILFADIYGD QPPWEIFGAN FEVKYRYFIT 60 PLKKRRIKDT RFSRTCAKGM WKGQTGEELI RRNSLGPVVG FKRKCRFETS DQCGHNNIWL 120 IIEYQVADSF FKKNNHILKE DFVVCRIKKK KIMDKEKNVD HAIEAQDGDV AGIINPMLIE 180 PNHNNVYSTW KDLVGVFDEV EATTTKFESK YNGEERDSVA STRRQRS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 62 | 67 | KKRRIK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975515 | 0.0 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025886113.1 | 1e-171 | NAC domain-containing protein 2-like | ||||
TrEMBL | A0A3Q7FI47 | 1e-169 | A0A3Q7FI47_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g059300.1.1 | 1e-170 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA814 | 13 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10490.1 | 1e-13 | NAC domain containing protein 52 |