PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim03g059270.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 343aa    MW: 38670.2 Da    PI: 6.3976
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim03g059270.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23e-05149168120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         ++Cp C k+F+r  n++ H+
  Sopim03g059270.0.1 149 FSCPVCFKTFNRYNNMQMHM 168
                         89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.9E-6149168IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.64149176IPR007087Zinc finger, C2H2
PROSITE patternPS000280151171IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MTDPNFYSQE EEWLKLNNPN IPSPPPNNNN YYYETPPLKE ALPLLSLLSP IKHDDDDDDE  60
GCCSISDLDK KGRRVEHMDD NSCTKDDDED VTVALHIGLP NPSSADLASI NKDDVSIPMA  120
NMINTTSTSS SRQYWIPTPS QILIGPTQFS CPVCFKTFNR YNNMQMHMWG HGSQYRKGPE  180
SLRGTQPTGI KCGKAFAVRG DWRTHEKNCG KLWYCICGSD FKHKRSLKDH IKAFGQGHGP  240
YGIHSFDDDD DDPASEVEQD NPPQHIDIDH TRSSTTALSH KQNHMIWALN MGNTARKVWG  300
KHLHQKCNIC VGLNVQPKTT YLIFTITIYT NINNTLNNLF SS*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004234792.31e-164zinc finger protein WIP2
TrEMBLA0A3Q7FKS71e-163A0A3Q7FKS7_SOLLC; Uncharacterized protein
STRINGSolyc03g059270.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2714122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-75C2H2 family protein