PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim03g059200.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB | ||||||||
Protein Properties | Length: 264aa MW: 29937.9 Da PI: 7.2342 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.9 | 2.4e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd +++ +v+ +G g+W++++++ g++R++k+c++rw +yl Sopim03g059200.0.1 14 RGPWTAEEDAKILAYVATHGIGNWTLVPQKAGLNRCGKSCRLRWTNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.6 | 1.8e-15 | 68 | 110 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++T++E++ +++++k G++ W++Ia+ ++ gRt++++k++w++ Sopim03g059200.0.1 68 DNFTPQEEDCILELHKTIGSR-WSLIAKQLP-GRTDNDVKNYWNT 110 68*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.1E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.647 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.41E-32 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.5E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.79E-12 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-24 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.498 | 66 | 116 | IPR017930 | Myb domain |
CDD | cd00167 | 3.09E-11 | 69 | 112 | No hit | No description |
Pfam | PF00249 | 2.3E-14 | 69 | 110 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048658 | Biological Process | anther wall tapetum development | ||||
GO:0052545 | Biological Process | callose localization | ||||
GO:0055046 | Biological Process | microgametogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MGRPPCCDKA NVKRGPWTAE EDAKILAYVA THGIGNWTLV PQKAGLNRCG KSCRLRWTNY 60 LRPDLKHDNF TPQEEDCILE LHKTIGSRWS LIAKQLPGRT DNDVKNYWNT KLKKKLVNMG 120 IDPVTHKPFA QVFAEYGKIS GLPIQSPTNH IQFFNNNINI FSNETTTPHH PLQQNYSTQI 180 YTRETLQTLC FTEQSHLPSS SSTSWNDDFI LGDPLTPGTF LSNHPVEQPT CSPAMDSFVD 240 TILARDKQML MDFPPLLDVY LDY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-30 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for anther development and early tapetal function during microspore maturation (PubMed:18397379, PubMed:21957980). Regulates callose dissolution required for microspores release from the tetrads (PubMed:18397379). {ECO:0000269|PubMed:18397379, ECO:0000269|PubMed:21957980}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC246962 | 0.0 | AC246962.1 Solanum lycopersicum chromosome 3 clone FOS0173E02, complete sequence. | |||
GenBank | AC247025 | 0.0 | AC247025.1 Solanum lycopersicum chromosome 3 clone FOS0173E02, complete sequence. | |||
GenBank | HG975515 | 0.0 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004234868.1 | 0.0 | transcription factor MYB35 | ||||
Swissprot | Q9LSI7 | 1e-81 | MYB35_ARATH; Transcription factor MYB35 | ||||
TrEMBL | A0A3Q7FKM9 | 0.0 | A0A3Q7FKM9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g059200.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28470.1 | 7e-82 | MYB family protein |
Publications ? help Back to Top | |||
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