PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim03g025870.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB | ||||||||
Protein Properties | Length: 280aa MW: 31876.7 Da PI: 6.7402 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.1 | 1.2e-14 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W+++Ed++l+++ ++G g+W++++ g+ R +k+c++rw +yl Sopim03g025870.0.1 16 KGLWSPDEDDRLKNYMIKHGHGCWSSVPINAGLQRNGKSCRLRWINYL 63 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.3 | 6.3e-17 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE+++++ +++++G++ W+ Ia+ ++ gRt++++k++w++yl Sopim03g025870.0.1 69 RGAFSLEEEDIILTLHAMFGNK-WSQIAQQLP-GRTDNEIKNHWHSYL 114 89********************.*********.************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.444 | 11 | 63 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-21 | 11 | 66 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.58E-28 | 14 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-10 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.0E-13 | 16 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.18E-9 | 19 | 63 | No hit | No description |
PROSITE profile | PS51294 | 26.905 | 64 | 118 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-25 | 67 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.8E-16 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-15 | 69 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.77E-11 | 71 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MGCKLAAEKP KQKHKKGLWS PDEDDRLKNY MIKHGHGCWS SVPINAGLQR NGKSCRLRWI 60 NYLRPGLKRG AFSLEEEDII LTLHAMFGNK WSQIAQQLPG RTDNEIKNHW HSYLKKRVSK 120 MGENEGHTKP GKTDSSSPSL KKLTPQNSSL DSFEHIEGSL ADSDQSVYPR ETQKSNLPKV 180 LFAEWLSLDQ FNGQDFQNSG SFSFEPCKSN FVYNNNAELH DILMHSLPMN NDDGNGVNQE 240 VLHNDIFPPQ LKFEDTLSGN GFEEFMSREF NINDDVMYI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-23 | 16 | 118 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975515 | 0.0 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004234444.1 | 0.0 | transcription factor LAF1-like | ||||
Swissprot | Q8LPH6 | 1e-53 | MYB86_ARATH; Transcription factor MYB86 | ||||
TrEMBL | A0A3Q7FEY0 | 0.0 | A0A3Q7FEY0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g025870.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52260.1 | 4e-61 | myb domain protein 19 |