PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim03g005510.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 176aa    MW: 20073.6 Da    PI: 9.4647
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim03g005510.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.96.1e-1949100256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         +y+GVr +  +g+++AeIrdp+ +g  +r +lg+f+tae+Aa+a+++a+ +l+g+
  Sopim03g005510.0.1  49 KYRGVRKRT-WGKFAAEIRDPTRQG--ARQWLGTFDTAEDAARAYDKAAFNLRGH 100
                         8*****887.**********96544..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.7E-1249100IPR001471AP2/ERF domain
SMARTSM003802.9E-3549113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-3149109IPR001471AP2/ERF domain
PROSITE profilePS5103223.72349107IPR001471AP2/ERF domain
CDDcd000183.00E-3049108No hitNo description
SuperFamilySSF541718.5E-2349108IPR016177DNA-binding domain
PRINTSPR003673.3E-105061IPR001471AP2/ERF domain
PRINTSPR003673.3E-107389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MSMWCVPPKK NLSHIIINMD SSSSSSSSKG KKVIQLEKEN SKDSNDLIKY RGVRKRTWGK  60
FAAEIRDPTR QGARQWLGTF DTAEDAARAY DKAAFNLRGH LATLNFPNEY YSKLNDPHYY  120
NYRTSLNVNI PSRSLERGIS SIGHQDKEII EFEYLDDSVL EELLGAEDPK KIIRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-294915914114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004234235.31e-113ethylene-responsive transcription factor ERF098-like
RefseqXP_027771791.11e-113ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC56e-45ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A3Q7FEY81e-127A0A3Q7FEY8_SOLLC; Uncharacterized protein
STRINGSolyc03g005510.1.11e-128(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.17e-38ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]