PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim02g093150.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | AP2 | ||||||||
Protein Properties | Length: 447aa MW: 50074.4 Da PI: 9.011 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.6 | 5.4e-17 | 84 | 133 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Sopim02g093150.0.1 84 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 133 78*******************......55************************997 PP | |||||||
2 | AP2 | 44 | 5.4e-14 | 176 | 226 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ k +g Sopim02g093150.0.1 176 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 226 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.0E-9 | 84 | 133 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-16 | 84 | 142 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.701 | 85 | 141 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.0E-17 | 85 | 141 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.52E-11 | 85 | 140 | No hit | No description |
SMART | SM00380 | 5.1E-32 | 85 | 147 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-9 | 176 | 226 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.6E-17 | 176 | 236 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.12E-25 | 176 | 236 | No hit | No description |
PROSITE profile | PS51032 | 15.659 | 177 | 234 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-16 | 177 | 234 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.9E-31 | 177 | 240 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-6 | 178 | 189 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-6 | 216 | 236 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.20.20.10 | 6.0E-4 | 245 | 351 | IPR029066 | PLP-binding barrel |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 447 aa Download sequence Send to blast |
MVGLGNGDEE QPVTRQFFPV DESEMGGVAA ENGCPNFPRA HWVGVKFYQT ETLGNTGLAR 60 PVDMVQQQQQ PIKKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDCGKQVY LGGFDTAHAA 120 ARAYDRAAIK FRGVEADINF SLEDYESDLK QMTSLTKEEF VHVLRRQSTG FPRGSSKYRG 180 VTLHKCGRWE ARMGQFLGKK YVYLGLFDTE IEAARAYDKA AIKCNGKDAV TNFDPSIYEN 240 ELNSIESTDN VADHNLDLSL GGSSSKQGSQ ELGDNRGQNS SSIMQLDIDW QRHGLRPEKQ 300 SALIDARRRE NRYNETETLQ LLSQTHLHSP ASLKHNNNNN SQVQRFGQFM RPGDQSHMIQ 360 MFPQQFGSSN YQIQFPSGSN GGRIGATNVR DLSLAATSNG SSQWQSNFPP QIFVAAAASS 420 GFPQQIVRPQ NWSSENGFHH SLMRPS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes early floral meristem identity (PubMed:7919989). Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:1675158). Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower, by spatially controlling the expression domains of multiple floral organ identity genes (PubMed:1675158, PubMed:23034631). Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS (PubMed:1675158). Directly represses AGAMOUS by recruiting the transcriptional corepressor TOPLESS and the histone deacetylase HDA19 (PubMed:23034631). It is also required during seed development (PubMed:1675158). {ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:23034631, ECO:0000269|PubMed:7919989}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by the C class floral homeotic protein AGAMOUS in stamens and carpels. MicroRNA 172 (miRNA172) negatively regulates APETALA2 at the translational level and may modulate its expression pattern. Seems not to be influenced by jasmonate and Alternaria brassicicola. {ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:12893888, ECO:0000269|PubMed:14555699}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT013640 | 0.0 | BT013640.1 Lycopersicon esculentum clone 132443F, mRNA sequence. | |||
GenBank | HQ586951 | 0.0 | HQ586951.1 Solanum lycopersicum AP2 transcription factor SlAP2c mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001233886.1 | 0.0 | APETALA2-like protein AP2c | ||||
Swissprot | P47927 | 1e-121 | AP2_ARATH; Floral homeotic protein APETALA 2 | ||||
TrEMBL | F6KQN2 | 0.0 | F6KQN2_SOLLC; AP2 transcription factor SlAP2c | ||||
STRING | Solyc02g093150.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2019 | 23 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 1e-116 | AP2 family protein |