PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim02g093130.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 134aa    MW: 15000.8 Da    PI: 6.5187
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim02g093130.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.91.4e-142441055
                 AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +k+g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  Sopim02g093130.0.1  2 RKWGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVYYLRG 44
                        46**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.137152IPR001471AP2/ERF domain
CDDcd000182.24E-23154No hitNo description
Gene3DG3DSA:3.30.730.101.3E-25153IPR001471AP2/ERF domain
SMARTSM003806.0E-29158IPR001471AP2/ERF domain
PfamPF008472.0E-8244IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-18253IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MRKWGKWVAE IREPNKRSRI WLGSYSTPVA AARAYDTAVY YLRGPSARLN FPELLVGDGG  60
LNDLSAASIR KKAIEVGAQV DAVQNSLATH HNHTEEKVHS ETASPSELKP CWFQEKPDLN  120
LKPEPEDPEV DYW*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010315978.12e-95ethylene-responsive transcription factor RAP2-10
RefseqXP_015066067.12e-95ethylene-responsive transcription factor RAP2-10
SwissprotO221745e-45ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBLA0A3Q7FDJ04e-94A0A3Q7FDJ0_SOLLC; Uncharacterized protein
STRINGSolyc02g093130.1.16e-95(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9432390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.12e-47DREB and EAR motif protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]