PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim02g092570.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 439aa    MW: 49434.5 Da    PI: 5.6069
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim02g092570.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS308.41.7e-94554352373
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPil 91 
                         ++lL++cA+a++s+d++laq++L+ l+++a pdgd++qRl+  f++AL  r a+   +++k l+++ +++++ ++ ++  l  f++++P++
  Sopim02g092570.0.1  55 EQLLVHCANAIESNDATLAQQILWVLNNIAPPDGDSNQRLTCGFLRALILRAAK--IGTCKLLTANLNHSMEtHKFSIIELASFVDLTPWH 143
                         79****************************************************..666666666655544436666666677******** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefn 179
                         +f++ +aN  Ileaveg + +Hi+Df++++++Q p+L++a ++R egpp +++T+ g+ e        ++ee+g +L +fA++ +v +ef+
  Sopim02g092570.0.1 144 RFGFTAANASILEAVEGYSIIHIVDFSLTHCMQIPTLIDAVSTRVEGPPLIKLTVAGATEDLppmLDLSYEELGAKLVNFARSRNVMMEFR 234
                         **********************************************************776698888999********************* PP

                GRAS 180 vl.......vakrledleleeLrvkp......gEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFler 256
                         v+            +++ +e+Lrv++      gEal++n++++lh++++e++ +++  r  +Lk++++l P++vv+v+++ad +s++++ r
  Sopim02g092570.0.1 235 VIpssssdgF----SNV-IEQLRVQNlirpdnGEALVINCHMMLHYIPEETTVISNsFRAMFLKAIRNLDPTIVVLVDEDADFTSNNLVCR 320
                         *977643333....333.66666665555677*****************99998886899******************************* PP

                GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksd 347
                         + +a++y +  +d++++ lpr s++r+++E+  + ++i+nv+a+eg +r er e +++W +r+++a F++  +se+ ++++k +l +++  
  Sopim02g092570.0.1 321 LRSAFNYLWIPYDTVDTFLPRGSKQRQWYEAD-ICWKIENVIAQEGIQRLERLEPKSQWVQRMRNANFRSSGFSEEGVTEVKNMLDEHA-A 409
                         ********************************.********************************************************.9 PP

                GRAS 348 gyrveeesgslvlgWkdrpLvsvSaW 373
                         g+ ++ +++ lvl+Wk++++v+++aW
  Sopim02g092570.0.1 410 GWGLKRDEEYLVLTWKGHNVVFATAW 435
                         99************************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.45728417IPR005202Transcription factor GRAS
PfamPF035145.9E-9255435IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MQFTESLPPQ VSSFSSLMMN KDSSTNNNQI QRARPWPGFH TSKNLGNIGD TNCMEQLLVH  60
CANAIESNDA TLAQQILWVL NNIAPPDGDS NQRLTCGFLR ALILRAAKIG TCKLLTANLN  120
HSMETHKFSI IELASFVDLT PWHRFGFTAA NASILEAVEG YSIIHIVDFS LTHCMQIPTL  180
IDAVSTRVEG PPLIKLTVAG ATEDLPPMLD LSYEELGAKL VNFARSRNVM MEFRVIPSSS  240
SDGFSNVIEQ LRVQNLIRPD NGEALVINCH MMLHYIPEET TVISNSFRAM FLKAIRNLDP  300
TIVVLVDEDA DFTSNNLVCR LRSAFNYLWI PYDTVDTFLP RGSKQRQWYE ADICWKIENV  360
IAQEGIQRLE RLEPKSQWVQ RMRNANFRSS GFSEEGVTEV KNMLDEHAAG WGLKRDEEYL  420
VLTWKGHNVV FATAWVPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B3e-485543734420Protein SHORT-ROOT
5b3h_E3e-485543734420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004231909.10.0scarecrow-like protein 32
SwissprotQ9SN221e-180SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A3Q7FB540.0A0A3Q7FB54_SOLLC; Uncharacterized protein
STRINGSolyc02g092570.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87812429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.10.0GRAS family protein