PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim02g092050.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | AP2 | ||||||||
Protein Properties | Length: 647aa MW: 72002.3 Da PI: 7.11 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45.9 | 1.4e-14 | 319 | 378 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +++Aa+ ++ a++k++g Sopim02g092050.0.1 319 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqsRKgRQVYLGGYDMEDKAARSYDLAALKYWG 378 78*******************988886678446**********99*************98 PP | |||||||
2 | AP2 | 45.7 | 1.6e-14 | 423 | 472 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Sopim02g092050.0.1 423 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 472 9***************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.4E-11 | 319 | 378 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.21E-20 | 319 | 386 | No hit | No description |
SuperFamily | SSF54171 | 3.4E-15 | 319 | 388 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 18.597 | 320 | 386 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-14 | 320 | 387 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.2E-27 | 320 | 392 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-6 | 321 | 332 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-17 | 421 | 482 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.36E-25 | 421 | 482 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.1E-18 | 422 | 480 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.177 | 422 | 480 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.5E-34 | 422 | 486 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.8E-9 | 423 | 472 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-6 | 462 | 482 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007276 | Biological Process | gamete generation | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0042127 | Biological Process | regulation of cell proliferation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 647 aa Download sequence Send to blast |
MKSLGNDDNS SNNNNNNWLG FSLSPHINSL EGPLTDHHHS TQPGSSSDVQ SSVPIRFSPT 60 HLNYPAMYYE GDNATLFSSL SAMPLKSDGS LCIMKGFNRS QQPQGMISST PKLEDFFGDA 120 AMGSHHYEGC NRGGMAHSLH NIYYNQHQDN ETSNSQDFLN HIQENTRHQQ QQQNYPDFSV 180 FRGHEVYHST EQGKTECSNI QVPTLTGDEM SGMNNWVSRN YQNQTGHALE QNMIGCMADN 240 GAESGSVGAM TYGDFKSLSL SMSPGSQSSC VTGTQTQQIS PTLTDCIAIE TKKRGSEKAN 300 NQKQIVHRKS IDTFGQRTSQ YRGVTRHRWT GRYEAHLWDN SCKKEGQSRK GRQVYLGGYD 360 MEDKAARSYD LAALKYWGPS THINFPLENY QQELEEMKNM TRQEYVAHLR RKSSGFSRGA 420 SMYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDIAAIKF RGVNAVTNFD 480 ISRYDVERIM ASNTLLAGDL ARRKKETETS KEICNQNLIA NASHQGEVNI QNKEENGNAV 540 EWTMSLYQSS SPGMDTNSMS STMLQGQMDE SARINTHLSN DSSLVTSLGS SREVSPAKNN 600 GHLMHNFAMP QSAPKLIPSP ATNITSWISS AQLRPNVPVF AAWTDA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00088 | SELEX | Transfer from AT4G37750 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975514 | 0.0 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004231948.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT isoform X2 | ||||
Swissprot | Q38914 | 1e-163 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A3Q7FD14 | 0.0 | A0A3Q7FD14_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g092050.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2074 | 24 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-134 | AP2 family protein |