PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim02g090800.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 132aa    MW: 15067 Da    PI: 8.7008
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim02g090800.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.9e-1788129348
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaia 48 
                         ++GVr+++ +g+W+AeIrdp     +  +r +lg+f tae+Aa+a+++
  Sopim02g090800.0.1  88 FRGVRQRP-WGKWAAEIRDP-----HkaQRLWLGTFATAEDAARAYDK 129
                         8*******.**********7.....337******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.90287131IPR001471AP2/ERF domain
SMARTSM003801.2E-1587130IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-2487129IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-1688130IPR016177DNA-binding domain
CDDcd000181.28E-2388128No hitNo description
PfamPF008479.5E-1188129IPR001471AP2/ERF domain
PRINTSPR003673.3E-118899IPR001471AP2/ERF domain
PRINTSPR003673.3E-11110126IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MTILCEDSLL EQENVSYTLT HKLTQEQENY YMVSALRHVV SGTGDNDEAS QLLLEVENAS  60
SGNLACRSID VELEKGKKRR RRNTKKEFRG VRQRPWGKWA AEIRDPHKAQ RLWLGTFATA  120
EDAARAYDKK L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1686129448ATERF1
3gcc_A1e-1686129448ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17681KKRRRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2153550.0AC215355.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0012A12, complete sequence.
GenBankAC2336430.0AC233643.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0208N01, complete sequence.
GenBankAC2336950.0AC233695.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0208N01, complete sequence.
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233630.24e-94ethylene-responsive transcription factor ERF109-like
TrEMBLA0A3Q7FCH28e-93A0A3Q7FCH2_SOLLC; Uncharacterized protein
STRINGSolyc02g090800.1.11e-93(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.15e-20ERF family protein