PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim02g090790.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 228aa    MW: 25375.3 Da    PI: 6.8125
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim02g090790.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-18100149356
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 
                         ++GVr+++ +g+W+AeIrdp     +  +r +lg+f tae+Aa+a+++ + +++ge
  Sopim02g090790.0.1 100 FRGVRQRP-WGKWAAEIRDP-----HkaQRLWLGTFATAEDAARAYDKKAIEFRGE 149
                         8*******.**********7.....337*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.51299156IPR001471AP2/ERF domain
SMARTSM003804.5E-3699162IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.4E-3299157IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-22100158IPR016177DNA-binding domain
CDDcd000183.15E-30100158No hitNo description
PRINTSPR003677.2E-11100111IPR001471AP2/ERF domain
PfamPF008471.7E-11100149IPR001471AP2/ERF domain
PRINTSPR003677.2E-11122138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MNRFRQDSLL EENNSYPLAH KLTENQELYY MVSALRHVVS GAGAGDVRAN GEAAQLLLEV  60
QNASGGSSST SANSMPRRSS INVELGKGKK RRRRNMKKEF RGVRQRPWGK WAAEIRDPHK  120
AQRLWLGTFA TAEDAARAYD KKAIEFRGEK AKTNFPISEY TARAVNDEIN KLASVVMEEE  180
RELLVQVLNG GDVAVNGENG SSIQNGDEDD FWETLEDDGL VKWICSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2198157464ATERF1
3gcc_A3e-2198157464ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18893KKRRRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2153550.0AC215355.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0012A12, complete sequence.
GenBankAC2336430.0AC233643.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0208N01, complete sequence.
GenBankAC2336950.0AC233695.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0208N01, complete sequence.
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233631.11e-167ethylene-responsive transcription factor ERF071-like
TrEMBLA0A3Q7FY901e-166A0A3Q7FY90_SOLLC; Uncharacterized protein
STRINGSolyc02g090790.1.11e-167(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.12e-26ERF family protein