PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim02g090770.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 204aa    MW: 23458.1 Da    PI: 7.0994
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim02g090770.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.56.7e-1889137355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                         ++GVr+++ +g+W+AeIrdp     +  +r +lg+f tae+Aa+a+++ + +++g
  Sopim02g090770.0.1  89 FRGVRQRP-WGKWAAEIRDP-----HkaQRLWLGTFVTAEDAARAYDKKAVEFRG 137
                         8*******.**********7.....337**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.9E-3488151IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-3188146IPR001471AP2/ERF domain
PROSITE profilePS5103223.20988145IPR001471AP2/ERF domain
PfamPF008471.5E-1089137IPR001471AP2/ERF domain
CDDcd000182.31E-2889145No hitNo description
SuperFamilySSF541711.57E-2189146IPR016177DNA-binding domain
PRINTSPR003671.0E-1089100IPR001471AP2/ERF domain
PRINTSPR003671.0E-10111127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MDNLSSFTHK LTHQQESHYM VSALKHVFSG AAVDGRADGE AAQLLWEVEN AATSDNSMPR  60
RSINVHPVHV ELELGKKKQR RRRNTKKEFR GVRQRPWGKW AAEIRDPHKA QRLWLGTFVT  120
AEDAARAYDK KAVEFRGNKA KTNFPLKEYI DDHDNSSPMM KVEEHENDQN VMNGDENNNN  180
GDDFWATLED DRLVKFITQD MSH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2287147465ATERF1
3gcc_A4e-2287147465ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2153550.0AC215355.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0012A12, complete sequence.
GenBankAC2336430.0AC233643.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0208N01, complete sequence.
GenBankAC2336950.0AC233695.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0208N01, complete sequence.
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015065485.11e-135ethylene-responsive transcription factor ERF095-like
TrEMBLA0A3Q7FCG61e-150A0A3Q7FCG6_SOLLC; Uncharacterized protein
STRINGSolyc02g090770.1.11e-151(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.11e-28ERF family protein