PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim02g090220.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Dof

Protein Properties

Length: 259aa MW: 27377.6 Da PI: 8.0339

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim02g090220.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.1	1.9e-38	20	79	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++l+cprCdstntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++P+Ggg+rkn k+s Sopim02g090220.0.1 20 PEHLPCPRCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPIGGGSRKNAKRS 79 57899***************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-29	16	77	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.0E-33	22	77	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.161	23	77	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	25	61	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0009751	Biological Process	response to salicylic acid
GO:0042545	Biological Process	cell wall modification
GO:0045787	Biological Process	positive regulation of cell cycle
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MPSDVRATKQ QQGGAPAPEP EHLPCPRCDS TNTKFCYYNN YNFSQPRHFC KSCRRYWTHG 60 GTLRDIPIGG GSRKNAKRSR TITTNSMNSS CLSSTLSPRD YHHAPHPSHV SPFLVPLTAD 120 HGGSLPFDVK PSVNMCGSFT SLLSSAQGPG GLLALGGFGL GVEDMGFGLG RPIWPFPGVS 180 HNTSVDNNSN GAGASMYGST WQLASGGEGG FVGAGGEIFN FPDLAISTHG NVFNCTFLAS 240 GVLALEFRTA VPSIDHQL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00402	DAP	Transfer from AT3G50410	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin and salicylic acid (SA). {ECO:0000269\|PubMed:10758484}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC215428	0.0	AC215428.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0226F10, complete sequence.
GenBank	HG975514	0.0	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004232067.1	1e-171	dof zinc finger protein DOF3.4
Swissprot	Q39088	4e-50	DOF34_ARATH; Dof zinc finger protein DOF3.4
TrEMBL	A0A3Q7FC45	0.0	A0A3Q7FC45_SOLLC; Uncharacterized protein
STRING	Solyc02g090220.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4532	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50410.1	4e-47	OBF binding protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]