PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim02g089500.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family DBB
Protein Properties Length: 143aa    MW: 15191.4 Da    PI: 8.1652
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim02g089500.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.12.8e-061961440
            zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                        r+C+ + +     +C+ ++++lC+ C +  H        H++v
  Sopim02g089500.0.1 19 RVCDSCRSTACAVYCRADSSFLCAGCDTRMHAAnllasrHKRV 61
                        68******99*******************99657777778765 PP
2zf-B_box28.43.4e-0960106242
            zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                         + ++C+ +e+ ++ + C+ +   lC +C   +H+       H +vp+
  Sopim02g089500.0.1  60 RVWICEACERSPAAFLCKADAASLCTSCDADIHSAsplacrHHRVPI 106
                         5789*****************************76999999877775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.0541663IPR000315B-box-type zinc finger
SMARTSM003363.6E-101663IPR000315B-box-type zinc finger
CDDcd000211.96E-51963No hitNo description
PROSITE profilePS5011910.83659106IPR000315B-box-type zinc finger
PfamPF006433.5E-760106IPR000315B-box-type zinc finger
CDDcd000211.73E-762106No hitNo description
SMARTSM003362.2E-464106IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MLKNENSGIF YGSRNNWSRV CDSCRSTACA VYCRADSSFL CAGCDTRMHA ANLLASRHKR  60
VWICEACERS PAAFLCKADA ASLCTSCDAD IHSASPLACR HHRVPIMTIL GSLYGPPAVE  120
TIGSGSIMIG GPTGESRRIM GS*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the light input to the circadian clock but does not affect flowering time.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY4902520.0AY490252.1 Lycopersicon esculentum CONSTANS 2 (CO2) gene, complete cds.
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019068015.19e-96LOW QUALITY PROTEIN: zinc finger protein CONSTANS-LIKE 2
SwissprotO500553e-45COL1_ARATH; Zinc finger protein CONSTANS-LIKE 1
TrEMBLQ2VY098e-95Q2VY09_SOLLC; CONSTANS 2
STRINGSolyc02g089500.2.11e-100(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2695022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15850.11e-47CONSTANS-like 1
Publications ? help Back to Top
  1. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]
  2. An C, et al.
    Mediator subunit MED25 links the jasmonate receptor to transcriptionally active chromatin.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(42): p. E8930-E8939
    [PMID:28973940]
  3. Ordoñez-Herrera N, et al.
    The Transcription Factor COL12 Is a Substrate of the COP1/SPA E3 Ligase and Regulates Flowering Time and Plant Architecture.
    Plant Physiol., 2018. 176(2): p. 1327-1340
    [PMID:29187570]