PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim02g089190.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 240aa    MW: 27625.1 Da    PI: 6.9359
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim02g089190.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding65.31.2e-201966148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd+ll ++v+++G g+W++++r+ g++Rt+k+c++rw +yl
  Sopim02g089190.0.1 19 KGPWTPEEDKLLSEYVNLHGEGRWSSVSRCAGLNRTGKSCRLRWVNYL 66
                        79********************************************97 PP
2Myb_DNA-binding51.52.4e-1672116147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg  T++E+ +++++++++G++ W+tIar+++ gRt++++k++w+++
  Sopim02g089190.0.1  72 RGHITPQEEGIIIELHALWGNK-WSTIARYLP-GRTDNEIKNYWRTH 116
                         6778******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.7961466IPR017930Myb domain
SuperFamilySSF466893.37E-3216113IPR009057Homeodomain-like
SMARTSM007171.1E-171868IPR001005SANT/Myb domain
PfamPF002493.9E-191966IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-242073IPR009057Homeodomain-like
CDDcd001672.89E-132166No hitNo description
PROSITE profilePS5129424.79967121IPR017930Myb domain
SMARTSM007173.0E-1471119IPR001005SANT/Myb domain
PfamPF002493.3E-1472116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.2E-2474121IPR009057Homeodomain-like
CDDcd001673.77E-1076117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MVRGMMGWGV NTDEQGWRKG PWTPEEDKLL SEYVNLHGEG RWSSVSRCAG LNRTGKSCRL  60
RWVNYLRPGL KRGHITPQEE GIIIELHALW GNKWSTIARY LPGRTDNEIK NYWRTHFKTK  120
VKVPVKQDKK RILRQMRNQT QQNYTNVSTT DMSPQAEEVI MIKSDDDNMF SINYNNDEDP  180
VELPPVTTIS DTWTENFPMD GLWNIDDELK VAIQNQAATA NCSYGTDYAV NLYNGGFIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-25191217108B-MYB
1h8a_C7e-251912127128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00388DAPTransfer from AT3G30210Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2153690.0AC215369.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0046M08, complete sequence.
GenBankAC2154610.0AC215461.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLe0092M23, complete sequence.
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233658.31e-180myb-related protein 305
TrEMBLA0A3Q7F9J11e-179A0A3Q7F9J1_SOLLC; Uncharacterized protein
STRINGSolyc02g089190.1.11e-180(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.12e-71myb domain protein 121