PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim02g088070.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Dof

Protein Properties

Length: 463aa MW: 51224.9 Da PI: 6.3908

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim02g088070.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.2	1.8e-38	106	165	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +ek+l+cprC+s++tkfCy+nny+ sqPr+fCk+C+ryWt+GG++rnvPvG+grrk+k+s Sopim02g088070.0.1 106 PEKTLPCPRCNSMETKFCYFNNYNASQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKHKNS 165 78999***************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-27	103	163	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.5E-31	108	164	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.379	110	164	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	112	148	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence Send to blast
MSEAIAIKDP AIKLFGWTIQ LPDFPAPAPE DSSFLAGEVE QELKGLYDDC IDDNEHLTTE 60 DSQDQNPIQQ RCDIINYYES STAKTSKSKE EHGETSNSHE RNLKKPEKTL PCPRCNSMET 120 KFCYFNNYNA SQPRHFCKNC QRYWTAGGTM RNVPVGAGRR KHKNSVLHYS HVSVSEALSN 180 VRTNFPTETQ HPPLTLNGTI LSFDTDKPVS ESMVSVLNVA DKGMQNCSGN GFQKYKELRI 240 QAGDNGDDHS DGSSVTAISS KDSDNGLPNT PRKNYNSFPT HLPCFTGAPW PYIWSSVHCR 300 NAVPPPGYSL PGIPMSFIPA TTYWGCTIPG SWNVPWMSPP TASHNQMPLT PDPNSPTSRK 360 HSRDENVLKS TGTEEEQRKE SDPGKRLWFP KTLRIDDPGE AAKSPIWATL GIKHEVVNSV 420 GGGLLSDFLP KNDERSCVSE NSTLLQVNPA AMSRSLNFNE SS*

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence Send to blast

MSEAIAIKDP AIKLFGWTIQ LPDFPAPAPE DSSFLAGEVE QELKGLYDDC IDDNEHLTTE  60
DSQDQNPIQQ RCDIINYYES STAKTSKSKE EHGETSNSHE RNLKKPEKTL PCPRCNSMET  120
KFCYFNNYNA SQPRHFCKNC QRYWTAGGTM RNVPVGAGRR KHKNSVLHYS HVSVSEALSN  180
VRTNFPTETQ HPPLTLNGTI LSFDTDKPVS ESMVSVLNVA DKGMQNCSGN GFQKYKELRI  240
QAGDNGDDHS DGSSVTAISS KDSDNGLPNT PRKNYNSFPT HLPCFTGAPW PYIWSSVHCR  300
NAVPPPGYSL PGIPMSFIPA TTYWGCTIPG SWNVPWMSPP TASHNQMPLT PDPNSPTSRK  360
HSRDENVLKS TGTEEEQRKE SDPGKRLWFP KTLRIDDPGE AAKSPIWATL GIKHEVVNSV  420
GGGLLSDFLP KNDERSCVSE NSTLLQVNPA AMSRSLNFNE SS*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC232769	0.0	AC232769.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0054K23, complete sequence.
GenBank	HG975514	0.0	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004232217.1	0.0	cyclic dof factor 3-like
Refseq	XP_025885361.1	0.0	cyclic dof factor 3-like
TrEMBL	A0A3Q7FWP3	0.0	A0A3Q7FWP3_SOLLC; Uncharacterized protein
STRING	Solyc02g088070.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-82	cycling DOF factor 2