PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim02g086930.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 286aa MW: 32229.5 Da PI: 4.6976 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.3 | 8.2e-21 | 66 | 119 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ Fe ++++ e++++LAkklgL+ rqV vWFqNrRa++k Sopim02g086930.0.1 66 KKRRLTPEQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWK 119 5678*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 135.1 | 2.5e-43 | 65 | 156 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ eqv+lLE+sFe+e+kLeperK++la++LglqprqvavWFqnrRAR+ktkqlE+dy++Lk++yd+l ++ ++++k++++L++e+ Sopim02g086930.0.1 65 EKKRRLTPEQVHLLEKSFETENKLEPERKTQLAKKLGLQPRQVAVWFQNRRARWKTKQLERDYDQLKSSYDSLLSDFDSVRKDNDKLKSEV 155 69**************************************************************************************998 PP HD-ZIP_I/II 92 k 92 Sopim02g086930.0.1 156 V 156 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.5E-20 | 49 | 123 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.415 | 61 | 121 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.1E-20 | 64 | 125 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 5.6E-18 | 66 | 119 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.09E-20 | 66 | 122 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-22 | 67 | 128 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 4.3E-6 | 92 | 101 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 96 | 119 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.3E-6 | 101 | 117 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 3.7E-18 | 121 | 163 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001558 | Biological Process | regulation of cell growth | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MGSGHIFFDP SSCHGNMLFL GSGDPVFRGP RSTMMKMEDS SKRRPFFSSP EDLYDEEYYD 60 EQSPEKKRRL TPEQVHLLEK SFETENKLEP ERKTQLAKKL GLQPRQVAVW FQNRRARWKT 120 KQLERDYDQL KSSYDSLLSD FDSVRKDNDK LKSEVVSLME KLQGKVVGGA GGNEKSDILE 180 VDAMTILQVK VKAEDRLSSG SGGSAVVDEH SPQLVDSGDS YFHTDHEEYP GPGGCNVPPP 240 MDGLQSEEDD GSDDHGSCHG YFSNVFVAEE QHHEQGEEPI GWFWS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 113 | 121 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00323 | DAP | Transfer from AT3G01470 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM902288 | 0.0 | AM902288.1 Solanum lycopersicum mRNA for homeodomain leucine zipper protein (hb-1 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001234296.1 | 0.0 | leucine-zipper transcription factor HD1 | ||||
Swissprot | Q02283 | 1e-95 | HAT5_ARATH; Homeobox-leucine zipper protein HAT5 | ||||
TrEMBL | B6GVA3 | 0.0 | B6GVA3_SOLLC; Homeodomain leucine zipper protein | ||||
STRING | Solyc02g086930.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7891 | 23 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 1e-81 | homeobox 1 |
Publications ? help Back to Top | |||
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