PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim02g085630.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 213aa MW: 24875 Da PI: 5.2552 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.4 | 6.6e-20 | 57 | 109 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++++eq++ Le+ F ++++ e++ +LA++lgL+ rqV vWFqNrRa++k Sopim02g085630.0.1 57 KRKLSEEQVNLLEQSFGDEHKLESERKDKLAAELGLDPRQVAVWFQNRRARWK 109 45899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 120.2 | 1.1e-38 | 56 | 147 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kr+ls+eqv+lLE+sF e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++d+ + e++rLe+ev +L+e+l+ Sopim02g085630.0.1 56 RKRKLSEEQVNLLEQSFGDEHKLESERKDKLAAELGLDPRQVAVWFQNRRARWKSKKLEEEYSKLKSEHDNNVVEKCRLETEVLKLKEQLN 146 8****************************************************************************************98 PP HD-ZIP_I/II 93 e 93 e Sopim02g085630.0.1 147 E 147 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.925 | 51 | 111 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.9E-20 | 54 | 115 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.72E-17 | 56 | 112 | No hit | No description |
Pfam | PF00046 | 5.0E-17 | 57 | 109 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.84E-18 | 57 | 120 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-20 | 58 | 118 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 5.8E-6 | 82 | 91 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 86 | 109 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.8E-6 | 91 | 107 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MNHQVIEDDN MVLISQYYPD IYTQLVPQQG ESKPRRRRKK NKLGEGSGND QMMMMRKRKL 60 SEEQVNLLEQ SFGDEHKLES ERKDKLAAEL GLDPRQVAVW FQNRRARWKS KKLEEEYSKL 120 KSEHDNNVVE KCRLETEVLK LKEQLNESEK EIQRLLLERC DGVSSNYTSP SASSFSMEAP 180 FLGEFGMDGL DNVFYAQENN YVQGLDWVNL YI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 37 | 58 | RKKNKLGEGSGNDQMMMMRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00473 | DAP | Transfer from AT4G36740 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC226001 | 0.0 | AC226001.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0116F10, complete sequence. | |||
GenBank | HG975514 | 0.0 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004232382.1 | 1e-156 | homeobox-leucine zipper protein ATHB-40 | ||||
Swissprot | O23208 | 3e-77 | ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40 | ||||
TrEMBL | A0A3Q7F7L4 | 1e-155 | A0A3Q7F7L4_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g085630.2.1 | 1e-155 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1289 | 24 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 6e-70 | homeobox protein 40 |
Publications ? help Back to Top | |||
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