PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim02g085600.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 537aa    MW: 59385.4 Da    PI: 5.4884
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim02g085600.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS331.41.7e-1011755352374
                GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         v+ L+++Ae+++++ ++la+ +Larl+++ +s +g+p+qR+a+yf+eAL+a+la+      +a +++++s+++++++++++k++s++sPi+
  Sopim02g085600.0.1 175 VDELIRFAECFETNAFQLAHVILARLNQRlRSAAGKPLQRAAFYFKEALQAQLAG------SARQTRSSSSSDVIQTIKSYKILSNISPIP 259
                         678*************************999************************......788899999999****************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                          fs +taNqa+leav+g+  vH+iDfdi+ G++W++++++La+++    +++p lRiT+++++e   + e + ++e+L++fA+el++ fe+
  Sopim02g085600.0.1 260 MFSSFTANQAVLEAVDGSMLVHVIDFDIGLGGHWASFMKELADKAecrkANAPILRITALVPEE--YAVESRLIRENLTQFARELNIGFEI 348
                         ******************************************877666689***********66..99999******************** PP

                GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysal 267
                         ++++ +++e l+++++++ +gE++aV l+ +++r +          + +++ ++++sP+vvv+v++e  + +++ sF + +++ le+ys+l
  Sopim02g085600.0.1 349 DFVLIRTFELLSFKAIKFMEGEKTAVLLSPAIFRRV------G---SGFVNELRRISPNVVVHVDSEglMGYGAMSFRQTVIDGLEFYSTL 430
                         **********************************98......3...48*******************87788******************* PP

                GRAS 268 fdsl.eaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355
                         ++sl +a+++  +  ++++k+E+++l ++iv+++ + g++        ++Wr+++ +aGF+pv ls++a  qa++ll +v+++g++v +++
  Sopim02g085600.0.1 431 LESLeAANIGGGNcgDWMRKIENFVLFPKIVDMIGAVGRR-----GGGGSWRDAMVDAGFRPVGLSQFADFQADCLLGRVQVRGFHVAKRQ 516
                         ****88999999999**********************998.....999******************************************* PP

                GRAS 356 gslvlgWkdrpLvsvSaWr 374
                         ++++l+W+dr+Lv++SaWr
  Sopim02g085600.0.1 517 AEMLLCWHDRALVATSAWR 535
                         ******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.18148515IPR005202Transcription factor GRAS
PfamPF035145.8E-99175535IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MKVPFSTNDN VSSKPLVNSN NSFTFPAATN GSNLCYEPKS VLELRRSPSP IVDKQIITTN  60
PDLSALCGGE DPLQLGDHVL SNFEDWDSLM RELGLHDDSA SLSKTNPLTH SESLTQFHNL  120
SEFSAESNQF PSPDFSFSDT NFPQQFPTVN QASFINALDL SGDIHQNWSV GFDYVDELIR  180
FAECFETNAF QLAHVILARL NQRLRSAAGK PLQRAAFYFK EALQAQLAGS ARQTRSSSSS  240
DVIQTIKSYK ILSNISPIPM FSSFTANQAV LEAVDGSMLV HVIDFDIGLG GHWASFMKEL  300
ADKAECRKAN APILRITALV PEEYAVESRL IRENLTQFAR ELNIGFEIDF VLIRTFELLS  360
FKAIKFMEGE KTAVLLSPAI FRRVGSGFVN ELRRISPNVV VHVDSEGLMG YGAMSFRQTV  420
IDGLEFYSTL LESLEAANIG GGNCGDWMRK IENFVLFPKI VDMIGAVGRR GGGGSWRDAM  480
VDAGFRPVGL SQFADFQADC LLGRVQVRGF HVAKRQAEML LCWHDRALVA TSAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-2718253427378Protein SCARECROW
5b3h_A3e-2718253426377Protein SCARECROW
5b3h_D3e-2718253426377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2260010.0AC226001.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0116F10, complete sequence.
GenBankAC2265040.0AC226504.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0106H06, complete sequence.
GenBankAF2733330.0AF273333.1 Lycopersicon esculentum clone BAC 19, complete sequence.
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004232383.10.0scarecrow-like protein 15
SwissprotO232101e-144SCL15_ARATH; Scarecrow-like protein 15
TrEMBLQ9FYW20.0Q9FYW2_SOLLC; BAC19.14
STRINGSolyc02g085600.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA83052230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-143GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]