PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim02g084590.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GATA
Protein Properties Length: 324aa    MW: 34786.7 Da    PI: 6.5131
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim02g084590.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.21.1e-18244278135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l
  Sopim02g084590.0.1 244 CSHCGVQKTPQWRAGPMGAKTLCNACGVRFKSGRL 278
                         *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.7E-796322IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.78238274IPR000679Zinc finger, GATA-type
SMARTSM004013.7E-16238292IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.57E-14240301No hitNo description
Gene3DG3DSA:3.30.50.105.6E-15242276IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.02E-13243291No hitNo description
PROSITE patternPS003440244269IPR000679Zinc finger, GATA-type
PfamPF003201.4E-16244278IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MTQNQTFGDD FSAAGAGQNG VSGDDFFVDD LLDFSNGFVE GEGDEEEEEG KNQGGEGISV  60
QKPCSVSIAV SPLKKTEIDD KGKVTISVNE DFASLPVSEI SVPTDDLDSL EWLSHFVEES  120
FSGYSLAYPA GKLPVEKKTG DGEIPVEEKK PCFATPVQTK ARTKRGRSSV RVWPVCSGSL  180
TESSSSSTSS SSTTTMSSSP PTGSWFLYPT PVHSAESPGK PLAKKLKKKP ASHGGNGPQQ  240
PRRCSHCGVQ KTPQWRAGPM GAKTLCNACG VRFKSGRLLP EYRPACSPTF STELHSNNHR  300
KVLEMRRKKE SEETGLTQPV QSF*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004232457.20.0GATA transcription factor 5-like
SwissprotQ9FH571e-74GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A3Q7F8830.0A0A3Q7F883_SOLLC; GATA transcription factor
STRINGSolyc02g084590.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11542481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.23e-69GATA transcription factor 5