PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim02g083750.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

GeBP

Protein Properties

Length: 422aa MW: 46854 Da PI: 4.4612

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim02g083750.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	113.5	1.3e-35	116	217	1	97
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgk.....spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdq 86 klfqrlw +eDei lLqG++++++++g + ++d+ afy+++k++++++++k+qlveK+rrLKkK+++ ++k+ sgke++f+++hdq Sopim02g083750.0.1 116 KLFQRLWMDEDEIELLQGFLEYTTQRGGinsssHHHHDTGAFYDQIKNKLQLDFNKNQLVEKLRRLKKKYRTVMSKMGSGKEFVFKSPHDQ 206 579*********************987764334459************************************************* PP DUF573 87 kifelskkiWg 97 +fe+s+kiW Sopim02g083750.0.1 207 ATFEISRKIWS 217 ********6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	3.5E-33	118	217	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence Send to blast
MASVEDQAVV YNDDDLDDEE DDEESGHPQN EAVVDEDDDV DVDEEEEEED DSTSSPPVPV 60 ANHSVAGEVT IAVVGVPATD SLCIEPKRER INDFGVTPAT MVVEEKKPLV LDDSRKLFQR 120 LWMDEDEIEL LQGFLEYTTQ RGGINSSSHH HHDTGAFYDQ IKNKLQLDFN KNQLVEKLRR 180 LKKKYRTVMS KMGSGKEFVF KSPHDQATFE ISRKIWSNAG PIVVRSSGPP PPPPADDGGF 240 DDEDSHLNLN HANFIDHTPN FNLNPNGFDV KTSKSKKRPR GGEEKPGYIQ QYYHQSSGGG 300 TNVILPPTPV SMAAPQATAT ATAAASIPSL IEETVRSCLS PIFKELFNNL NGSRYSGFGM 360 SLGPSPLVGF GNSLMSCDIN MKTDEKWRKQ QILELEVYSK RLELVQDQIK AQLEELRSMN 420 S*

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence Send to blast

MASVEDQAVV YNDDDLDDEE DDEESGHPQN EAVVDEDDDV DVDEEEEEED DSTSSPPVPV  60
ANHSVAGEVT IAVVGVPATD SLCIEPKRER INDFGVTPAT MVVEEKKPLV LDDSRKLFQR  120
LWMDEDEIEL LQGFLEYTTQ RGGINSSSHH HHDTGAFYDQ IKNKLQLDFN KNQLVEKLRR  180
LKKKYRTVMS KMGSGKEFVF KSPHDQATFE ISRKIWSNAG PIVVRSSGPP PPPPADDGGF  240
DDEDSHLNLN HANFIDHTPN FNLNPNGFDV KTSKSKKRPR GGEEKPGYIQ QYYHQSSGGG  300
TNVILPPTPV SMAAPQATAT ATAAASIPSL IEETVRSCLS PIFKELFNNL NGSRYSGFGM  360
SLGPSPLVGF GNSLMSCDIN MKTDEKWRKQ QILELEVYSK RLELVQDQIK AQLEELRSMN  420
S*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC215352	0.0	AC215352.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0009K06, complete sequence.
GenBank	AC215370	0.0	AC215370.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0056D15, complete sequence.
GenBank	HG975514	0.0	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004232499.1	0.0	probable transcription factor At3g04930
TrEMBL	A0A3Q7F8W3	0.0	A0A3Q7F8W3_SOLLC; Uncharacterized protein
STRING	Solyc02g083750.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4052	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	3e-73	DNA-binding storekeeper protein-related transcriptional regulator