PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim02g082040.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 325aa    MW: 37130.9 Da    PI: 7.4995
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim02g082040.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.48.8e-151360148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg W +eEde l++ ++ +G  +W+++++  g+ R++k+c++rw +yl
  Sopim02g082040.0.1 13 RGLWPPEEDENLIKHINTHGHSCWSSVPKLAGLQRCGKSCRLRWINYL 60
                        788*******************************************97 PP
2Myb_DNA-binding51.42.4e-1666109146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg ++++E+ +++d+++ lG++ W+ Ia++++ gRt++++k++w++
  Sopim02g082040.0.1  66 RGCFSEQEERIIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                         899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-24463IPR009057Homeodomain-like
PROSITE profilePS5129415.371860IPR017930Myb domain
SuperFamilySSF466894.49E-2710107IPR009057Homeodomain-like
SMARTSM007176.1E-121262IPR001005SANT/Myb domain
PfamPF002492.0E-131360IPR001005SANT/Myb domain
CDDcd001671.01E-91660No hitNo description
PROSITE profilePS5129426.12561115IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2464116IPR009057Homeodomain-like
SMARTSM007171.7E-1565113IPR001005SANT/Myb domain
PfamPF002498.2E-1566109IPR001005SANT/Myb domain
CDDcd001674.51E-1169108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MGHHCCSKQK VKRGLWPPEE DENLIKHINT HGHSCWSSVP KLAGLQRCGK SCRLRWINYL  60
RPDLKRGCFS EQEERIIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLISQGF  120
DPNTHNLLST KKKANKNNYT KSSIFTIETS LSSSSTKELV SMDMIKASLA ALSTFPNYAN  180
NMSMPQYQTS LSRLYGSVCV PTTTNIIGNS NYASTIDYKK QSTVINEKCM WSFTGFETPQ  240
HEFGNGHEEM KQEAQVQVED KSCQEEVLYK VNDLHEFNHD GRRIAENVTF DEGSDFDFEF  300
MNSELVPRGI FTNIDSIDQL AWDC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-30131157108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004232612.10.0transcription factor MYB86-like
SwissprotQ8LPH63e-67MYB86_ARATH; Transcription factor MYB86
TrEMBLA0A3Q7F5S70.0A0A3Q7F5S7_SOLLC; Uncharacterized protein
STRINGSolyc02g082040.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.17e-81myb domain protein 67