PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim02g078620.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Dof

Protein Properties

Length: 285aa MW: 32262.8 Da PI: 6.4163

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim02g078620.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	110.6	7.3e-35	40	96	3	59
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 +++lkcprCds ntkfCyynny+ sqPr++Ck+C+r+Wt+GG+lrnvPvGggr++++ Sopim02g078620.0.1 40 SESLKCPRCDSINTKFCYYNNYNKSQPRHYCKGCKRHWTEGGTLRNVPVGGGRKNKR 96 6789***********************************************976665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-23	39	96	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.9E-31	42	95	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	26.972	43	97	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	45	81	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MGLSTKLVSI DDDGLDNWTT TTHNTRPEPP SIRRQLPSKS ESLKCPRCDS INTKFCYYNN 60 YNKSQPRHYC KGCKRHWTEG GTLRNVPVGG GRKNKRVRPT DPVDHINGRK HVRLEVNDQR 120 CPLITTTSMT NSIITSSILP SVTLIRGNST ITSAIDEDIK NLTSSSLPYD IFSNISQDHG 180 NTHFSLIPNS STNTQLSSNV YYNYEHMGKF DSTILEESTI TTIMPITSNN DLHSYEPWKV 240 PETSNNDLII DENMSNNYWN WNEFETLSNA ADLNISWDDL EIKP*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC232770	0.0	AC232770.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0104K03, complete sequence.
GenBank	AC232778	0.0	AC232778.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLm0127N23, complete sequence.
GenBank	HG975514	0.0	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006347078.1	0.0	PREDICTED: dof zinc finger protein DOF2.2-like
TrEMBL	A0A3Q7F622	0.0	A0A3Q7F622_SOLLC; Uncharacterized protein
STRING	Solyc02g078620.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6171	20	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	2e-29	TARGET OF MONOPTEROS 6