PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim02g077960.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Dof

Protein Properties

Length: 300aa MW: 32213.3 Da PI: 9.9194

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim02g077960.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.8	4.9e-38	37	93	5	61
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +kcprCds+ntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rk k++ Sopim02g077960.0.1 37 PQKCPRCDSNNTKFCYYNNYSLTQPRYFCKTCRRYWTQGGTLRNVPVGGGCRKGKRT 93 689**************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-26	32	92	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.863	38	92	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.7E-32	38	92	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	40	76	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MEDQLGGRSS GENDRNQQQR RMKMPENNSA SPAQPPPQKC PRCDSNNTKF CYYNNYSLTQ 60 PRYFCKTCRR YWTQGGTLRN VPVGGGCRKG KRTMKGGGSS SSAGESSSSR SHHQVLYPPQ 120 IPNLSAAAAA FFSGNNSRSQ PPPLPSMSSL YTGAAGGGGF LSSLAAMQSM SQLSQGINNQ 180 SQLGVISGTN NNNNQFGNFN IPTPPPKVQI DQQMESTGFY QKPNLESSFF PSDQTLQFQP 240 ARPLGSWTQR FINNNNNNIW PNNSASNTSS GAASSSAANA SLGPNDHQWP DLPGFGPSP*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975514	0.0	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025885168.1	0.0	dof zinc finger protein DOF5.3-like
Refseq	XP_025885169.1	0.0	dof zinc finger protein DOF5.3-like
TrEMBL	A0A3Q7FQM1	0.0	A0A3Q7FQM1_SOLLC; Uncharacterized protein
STRING	Solyc02g077960.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	4e-33	TARGET OF MONOPTEROS 6