PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim02g077950.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Dof

Protein Properties

Length: 380aa MW: 41588.6 Da PI: 8.1284

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim02g077950.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.7	6e-39	30	89	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+ + Sopim02g077950.0.1 30 PPHLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRIK 89 5679*****************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.9E-33	32	87	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.525	33	87	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	8.0E-28	33	87	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	35	71	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MDSNGTNAAT SNNMEKPIQD PSQQQQQQPP PHLKCPRCDS SNTKFCYYNN YSLSQPRHFC 60 KACKRYWTRG GTLRNVPVGG GCRKNKRIKR PSVNSSSSTT TTSHDIITTS TPNIVNPSHH 120 HQLHHGVVHN NIDHLSTTNS QNHLNPLFYG LTHERSDLNI PFARLFNSRV SSHAGGVDPE 180 GQVYSLTDNI PGLMDRRMGL GFSNSSGGVV NMGHENNNNN NNSSSSNYGH GGFNPIKQIQ 240 DVHVMSTSNC TTSTTSLLSS YPNMFGSSSS TSTMASLIAS SLQQQKFMSN INGNSFHSLL 300 TPNNYEELQM SRGENNNTNI NNVHEGGGNG ITMLKEEKMD LSNHQIHEQI INSSDPSLSW 360 NGAWLDPSNM GSNSVPSLI*

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MDSNGTNAAT SNNMEKPIQD PSQQQQQQPP PHLKCPRCDS SNTKFCYYNN YSLSQPRHFC  60
KACKRYWTRG GTLRNVPVGG GCRKNKRIKR PSVNSSSSTT TTSHDIITTS TPNIVNPSHH  120
HQLHHGVVHN NIDHLSTTNS QNHLNPLFYG LTHERSDLNI PFARLFNSRV SSHAGGVDPE  180
GQVYSLTDNI PGLMDRRMGL GFSNSSGGVV NMGHENNNNN NNSSSSNYGH GGFNPIKQIQ  240
DVHVMSTSNC TTSTTSLLSS YPNMFGSSSS TSTMASLIAS SLQQQKFMSN INGNSFHSLL  300
TPNNYEELQM SRGENNNTNI NNVHEGGGNG ITMLKEEKMD LSNHQIHEQI INSSDPSLSW  360
NGAWLDPSNM GSNSVPSLI*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ672601	0.0	DQ672601.1 Lycopersicon esculentum cultivar Ailsa Craig leucine-rich repeat family protein, putative polyprotein, auxin repressed/dormancy associated protein, putative zinc finger protein, putative protease/hydrolase, mitochondrial amino acid carrier, squamosa promoter binding-like protein, putative retroelement pol polyprotein, and Dof zinc finger protein genes, complete cds.
GenBank	HG975514	0.0	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004232898.1	0.0	dof zinc finger protein DOF1.4
TrEMBL	Q0PY33	0.0	Q0PY33_SOLLC; Dof zinc finger protein
STRING	Solyc02g077950.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	4e-36	Dof family protein