PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim02g077810.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 182aa MW: 20266.1 Da PI: 9.7238 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.6 | 2.3e-16 | 17 | 66 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr + +g + AeI++ s +r+ ++lg+f+taeeAa+a++aa++++ g Sopim02g077810.0.1 17 RYKGVRKLS-TGNYIAEIKVTS---QRRFVWLGTFDTAEEAARAYDAAARQYLG 66 59****887.9*********43...35***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.86E-17 | 17 | 75 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.3E-25 | 17 | 80 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.7E-10 | 17 | 66 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.215 | 17 | 74 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-22 | 17 | 74 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-6 | 18 | 29 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-6 | 40 | 56 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MAQNSNINVR VGSSEMRYKG VRKLSTGNYI AEIKVTSQRR FVWLGTFDTA EEAARAYDAA 60 ARQYLGPRTV INFPPLTNQK DVKRSRDYLQ KLNRKDVMIN TCASSSGSGE TLMPNQSSDQ 120 EEFRRFTTVT GVSVMMSMVR DRSLIEALTR EGLILPDPEI IDTQPLNLEL TLAPPGTMAN 180 K* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-14 | 11 | 78 | 8 | 76 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975514 | 0.0 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015064827.1 | 1e-110 | ethylene-responsive transcription factor 4-like | ||||
TrEMBL | A0A3Q7FQJ1 | 1e-131 | A0A3Q7FQJ1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g077810.1.1 | 1e-132 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA18488 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15210.1 | 5e-10 | ethylene responsive element binding factor 4 |