PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim02g077810.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 182aa    MW: 20266.1 Da    PI: 9.7238
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim02g077810.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.62.3e-161766255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +ykGVr  + +g + AeI++ s   +r+ ++lg+f+taeeAa+a++aa++++ g
  Sopim02g077810.0.1 17 RYKGVRKLS-TGNYIAEIKVTS---QRRFVWLGTFDTAEEAARAYDAAARQYLG 66
                        59****887.9*********43...35***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.86E-171775IPR016177DNA-binding domain
SMARTSM003806.3E-251780IPR001471AP2/ERF domain
PfamPF008478.7E-101766IPR001471AP2/ERF domain
PROSITE profilePS5103218.2151774IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-221774IPR001471AP2/ERF domain
PRINTSPR003673.9E-61829IPR001471AP2/ERF domain
PRINTSPR003673.9E-64056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MAQNSNINVR VGSSEMRYKG VRKLSTGNYI AEIKVTSQRR FVWLGTFDTA EEAARAYDAA  60
ARQYLGPRTV INFPPLTNQK DVKRSRDYLQ KLNRKDVMIN TCASSSGSGE TLMPNQSSDQ  120
EEFRRFTTVT GVSVMMSMVR DRSLIEALTR EGLILPDPEI IDTQPLNLEL TLAPPGTMAN  180
K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-141178876Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015064827.11e-110ethylene-responsive transcription factor 4-like
TrEMBLA0A3Q7FQJ11e-131A0A3Q7FQJ1_SOLLC; Uncharacterized protein
STRINGSolyc02g077810.1.11e-132(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1848844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15210.15e-10ethylene responsive element binding factor 4