PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim02g076810.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Trihelix
Protein Properties Length: 282aa    MW: 32453.8 Da    PI: 5.8306
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim02g076810.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.23.4e-1624114186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +W++q + +L++a  ++  +l+rg+l++++W++vs+ +     ++r+ +r+ +qCk++++ l+k+yk +k+  ++ + + +s++p+f++l+
  Sopim02g076810.0.1  24 CWSEQATWTLVDAWGRRYMELNRGNLRQKDWQRVSDSVnalhgHSRKTHRTDVQCKNRIDTLKKKYKVEKAKIIESNGTLTSSWPFFERLD 114
                         7**********************************************************************999998888899******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.0E-2422115No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MGEITESSTQ VTMSSRPLPF REDCWSEQAT WTLVDAWGRR YMELNRGNLR QKDWQRVSDS  60
VNALHGHSRK THRTDVQCKN RIDTLKKKYK VEKAKIIESN GTLTSSWPFF ERLDMLIENS  120
DKKVTPVMVS LLPLPMSSPP MGVPLPYRRS AVVTPVSLPQ KRQLPAFDES CFRRNYSAVA  180
AAAAAGGGEE DYDDEEEDVE MTEESWEEDG MRRLAKAIES FGEIYERVEG MKQRQMVELE  240
KQRMQFAKDL EVQRMQLFMD TQVQLEKIKH TKLSGSNDLY S*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233061.10.0trihelix transcription factor ASIL2 isoform X2
TrEMBLM1AN531e-155M1AN53_SOLTU; Uncharacterized protein
STRINGSolyc02g076810.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13182370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.11e-32sequence-specific DNA binding transcription factors