PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim02g071990.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family BES1
Protein Properties Length: 325aa    MW: 34908.9 Da    PI: 8.0569
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim02g071990.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822195.32.2e-6021421147
              DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspe 91 
                         ++++r ptwkErEnnkrRERrRRaiaaki+aGLR++Gnyklpk++DnneVlkALc+eAGw+ve+DGttyrkg+kp ++ +++gs  s+s +
  Sopim02g071990.0.1   2 TSGTRLPTWKERENNKRRERRRRAIAAKIFAGLRMYGNYKLPKHCDNNEVLKALCKEAGWIVEEDGTTYRKGCKPVTRIDIGGS-VSVS-S 90 
                         5899************************************************************************66666554.4444.4 PP

              DUF822  92 sslqsslkssalaspvesysaspksssfpspssldsislasa....asllpvlsvlslvs 147
                         ss+q         sp +sy++sp sss+psp+s+  + + ++    +sl+p+l++ls+ s
  Sopim02g071990.0.1  91 SSYQ--------LSPGASYNPSPVSSSIPSPVSSHYVANVQNnsdpNSLIPWLKNLSSGS 142
                         5667........566666666666666666666555443333345599*******98754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056879.1E-623139IPR008540BES1/BZR1 plant transcription factor, N-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MTSGTRLPTW KERENNKRRE RRRRAIAAKI FAGLRMYGNY KLPKHCDNNE VLKALCKEAG  60
WIVEEDGTTY RKGCKPVTRI DIGGSVSVSS SSYQLSPGAS YNPSPVSSSI PSPVSSHYVA  120
NVQNNSDPNS LIPWLKNLSS GSSPSLSNFP HHLCIPGGSI SAPVTPPLSS PTASTPRMND  180
NWENPTANST WIQQHYPFLP SSTPPSPGRQ TPPDSGWLSG VQTPQDGPSS PTFSLVSSNP  240
FGFKEPLSNG GSRMWTPGQS GTCSPAVGPC MDQTADVPMS DAISAEFAFG SNMKGVVKPW  300
EGERIHEECI SDDLELTLGN SSTR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A4e-24677372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B4e-24677372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C4e-24677372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D4e-24677372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2265210.0AC226521.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLm0096H01, complete sequence.
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233053.10.0BES1/BZR1 homolog protein 4 isoform X4
RefseqXP_010316857.10.0BES1/BZR1 homolog protein 4 isoform X3
SwissprotQ9ZV881e-125BEH4_ARATH; BES1/BZR1 homolog protein 4
TrEMBLA0A3Q7FPF00.0A0A3Q7FPF0_SOLLC; Uncharacterized protein
STRINGSolyc02g071990.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19842464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.11e-103BES1/BZR1 homolog 4