PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim02g069830.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HD-ZIP
Protein Properties Length: 843aa    MW: 92788.9 Da    PI: 6.4244
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim02g069830.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.78.4e-181371357
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                        k  ++t+eq+e+Le++++++++p+  +r +L +++    +++ +q+kvWFqNrR +ek+
  Sopim02g069830.0.1 13 KYVRYTPEQVEALERVYAECPKPTSLKRHQLIRECsilsNIDPKQIKVWFQNRRCREKQ 71
                        6789*****************************************************97 PP
2bZIP_122.13.3e-07651061859
                         HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1  18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                         rr+R++ ++e  +L++   +L+a Nk L +e+++l+k+v+ l
  Sopim02g069830.0.1  65 RRCREKQRKEASHLQTVNRKLTAMNKLLMEENDRLQKHVSHL 106
                         9*************************************9977 PP
3START169.62.1e-531623682203
                         HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EE CS
               START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..ga 90 
                         +aee+++e++ ka+ ++  Wv++  +++g+e++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++  ++l+vi +g  g+
  Sopim02g069830.0.1 162 IAEETLTEFLGKATGTAVDWVQMIGMKPGPESIGIVAVSRNCNGVAARACGLVSLEPM-KVAEILKDRPSWYRDCRCLDILNVIPTGngGT 251
                         6899******************************************************.8888888888********************** PP

                         EEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
               START  91 lqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                         ++l++ +++a+++l+p Rdf+++Ry+ +l++g++vi+++S++s++  p      s+vRa++lpSg+li+p+++g+s +++v+h+dl++ ++
  Sopim02g069830.0.1 252 IELIYLQTYAPTTLAPaRDFWTLRYTTSLEDGSLVICERSLTSNTGGPVgppATSSVRAKMLPSGFLIRPCEGGGSIIHIVDHIDLDACSV 342
                         **********************************************9999999************************************** PP

                         HHHHHHHHHHHHHHHHHHHHHHTXXX CS
               START 178 hwllrslvksglaegaktwvatlqrq 203
                         +++lr+l++s+ + ++k ++a++++ 
  Sopim02g069830.0.1 343 PEVLRPLYESSKILAQKLTMAAFRYI 368
                         *********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.418872IPR001356Homeobox domain
SMARTSM003891.5E-151076IPR001356Homeobox domain
CDDcd000869.24E-161373No hitNo description
PfamPF000462.2E-151371IPR001356Homeobox domain
SuperFamilySSF466895.13E-171377IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.1E-181571IPR009057Homeodomain-like
CDDcd146861.10E-565101No hitNo description
PROSITE profilePS5084825.976152380IPR002913START domain
CDDcd088753.24E-70156372No hitNo description
Gene3DG3DSA:3.30.530.203.8E-19160343IPR023393START-like domain
SMARTSM002344.9E-50161371IPR002913START domain
SuperFamilySSF559611.02E-33162373No hitNo description
PfamPF018527.1E-51162369IPR002913START domain
PfamPF086701.9E-46696841IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 843 aa     Download sequence    Send to blast
MHKDCNKEMD SSKYVRYTPE QVEALERVYA ECPKPTSLKR HQLIRECSIL SNIDPKQIKV  60
WFQNRRCREK QRKEASHLQT VNRKLTAMNK LLMEENDRLQ KHVSHLVYDN GFMRQQLHTV  120
NSTTTDTCCE SVVVSGQQQQ QNPMPQHHPQ RDANSPAGLL AIAEETLTEF LGKATGTAVD  180
WVQMIGMKPG PESIGIVAVS RNCNGVAARA CGLVSLEPMK VAEILKDRPS WYRDCRCLDI  240
LNVIPTGNGG TIELIYLQTY APTTLAPARD FWTLRYTTSL EDGSLVICER SLTSNTGGPV  300
GPPATSSVRA KMLPSGFLIR PCEGGGSIIH IVDHIDLDAC SVPEVLRPLY ESSKILAQKL  360
TMAAFRYIRQ IAQETSGEIQ YAGGRQPAVL RAFSQRLCRG FNNAVSGFID DGWTIMGSDG  420
VDDVTIAVNS SPSKFLDAQY NTLSILPTFG GVLCARASML LQDVCPALLV RFLREHRSEW  480
ADYGVDAYSS ASLKASPYAV PCARPGVFPS SQVILPLAQT VEHEEFLEVV RLEGHAFSPE  540
DIALSRDMYL LQLCSGVEEN ATGACAQLVF AHIDESFGDD APLLPSGFSV IPLEPKSDSP  600
SAARTLDLAS TLEARTGGTR PAGEVEGSSY NHRSVLTIAF QFAFENHYRE NVAAMARQYV  660
RSIVGSVQRV AMAIAPSRLC SQLTPKSFPG SPEAVTLARW ICRSYKNHTG GELLQMDSQA  720
AGDAVLKQLW HHTDSIMCCS VKMNDSAFFS FANQAGLDML ETTLIALQDI MLDKILDEAG  780
RKVLLSEFPK IMQQGFAYLP AGLCVSSMGR PVSYEQAVAW KVLNDDNSNH CLAFMFTNWS  840
FI*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the determination of adaxial-abaxial polarity in ovule primordium. Specifies adaxial leaf fates. {ECO:0000269|PubMed:11395776, ECO:0000269|PubMed:15328016, ECO:0000269|PubMed:15598805}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR165 and miR166. {ECO:0000269|PubMed:14999284, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:17237362}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233170.10.0homeobox-leucine zipper protein ATHB-14 isoform X2
SwissprotO042910.0ATB14_ARATH; Homeobox-leucine zipper protein ATHB-14
TrEMBLM1BWB20.0M1BWB2_SOLTU; Uncharacterized protein
STRINGSolyc02g069830.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  3. Müller CJ, et al.
    PHABULOSA Mediates an Auxin Signaling Loop to Regulate Vascular Patterning in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 956-70
    [PMID:26637548]
  4. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  5. Kim ES, et al.
    HAWAIIAN SKIRT regulates the quiescent center-independent meristem activity in Arabidopsis roots.
    Physiol Plant, 2016. 157(2): p. 221-33
    [PMID:26968317]
  6. Husbands AY,Aggarwal V,Ha T,Timmermans MC
    In Planta Single-Molecule Pull-Down Reveals Tetrameric Stoichiometry of HD-ZIPIII:LITTLE ZIPPER Complexes.
    Plant Cell, 2016. 28(8): p. 1783-94
    [PMID:27385814]
  7. Di Ruocco G, et al.
    Differential spatial distribution of miR165/6 determines variability in plant root anatomy.
    Development, 2018.
    [PMID:29158439]
  8. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  9. Hashimoto K,Miyashima S,Sato-Nara K,Yamada T,Nakajima K
    Functionally Diversified Members of the MIR165/6 Gene Family Regulate Ovule Morphogenesis in Arabidopsis thaliana.
    Plant Cell Physiol., 2018. 59(5): p. 1017-1026
    [PMID:29462472]