PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim02g067340.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 336aa    MW: 37397.7 Da    PI: 5.9348
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim02g067340.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.5e-181461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd  lv +v+q+G+g+W++ + + g++R+ k+c++rw +yl
  Sopim02g067340.0.1 14 KGPWTPEEDIMLVSYVQQHGPGNWRALPTKTGLRRCSKSCRLRWTNYL 61
                        79********************************************97 PP
2Myb_DNA-binding49.31.2e-1567112148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++T +E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Sopim02g067340.0.1  67 RGNFTDQEEKMIIQLQALLGNK-WAAIASYLP-ERTDNDIKNYWNTHL 112
                         89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.18965IPR017930Myb domain
SuperFamilySSF466896.5E-3110108IPR009057Homeodomain-like
SMARTSM007173.1E-141363IPR001005SANT/Myb domain
PfamPF002496.1E-161461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-241568IPR009057Homeodomain-like
CDDcd001671.81E-101661No hitNo description
PROSITE profilePS5129419.98266116IPR017930Myb domain
SMARTSM007176.0E-1666114IPR001005SANT/Myb domain
PfamPF002499.7E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-2569117IPR009057Homeodomain-like
CDDcd001679.53E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MGRVPCCDKM GVKKGPWTPE EDIMLVSYVQ QHGPGNWRAL PTKTGLRRCS KSCRLRWTNY  60
LRPGIKRGNF TDQEEKMIIQ LQALLGNKWA AIASYLPERT DNDIKNYWNT HLKKKMKRLD  120
QCHGSNDLFS LENGLTHLSS SNSSTSRGQW ERTLQADINM AKKALHNALS LENPTSSHNN  180
NIKQENTQVS STSTIYASST ENIARLLQGW IGSSTSSTNN SESSKTSSNN IATTDSSSCD  240
GTPNAETKGG MGLMEAFESL FGLESFESSS SDELSQTTTP EAIKIEIKKE ENEHDVEVPL  300
SIILENWLLD ENTLNIQPKN DLTTLISFDE TPQLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-26141164105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117LKKKMKR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the activation of cuticular wax biosynthesis under drought stress. Binds directly to the promoters of genes involved in cuticular wax biosynthesis. Transactivates WSD1, KCS2/DAISY, CER1, CER2, FAR3 and ECR genes (PubMed:25305760, PubMed:27577115). Functions together with MYB96 in the activation of cuticular wax biosynthesis (PubMed:27577115). {ECO:0000269|PubMed:25305760, ECO:0000269|PubMed:27577115}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, osmotic shock and abscisic acid (ABA). {ECO:0000269|PubMed:25305760}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX991340.0X99134.1 L.esculentum mRNA for myb-related transcription factor, THM6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001234294.20.0transcription factor
SwissprotQ9SN781e-98MYB94_ARATH; Transcription factor MYB94
TrEMBLA0A3Q7F0T30.0A0A3Q7F0T3_SOLLC; Uncharacterized protein
TrEMBLQ401750.0Q40175_SOLLC; Transcription factor
STRINGSolyc02g067340.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.12e-96myb domain protein 94
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Cui F, et al.
    Dissecting Abscisic Acid Signaling Pathways Involved in Cuticle Formation.
    Mol Plant, 2016. 9(6): p. 926-38
    [PMID:27060495]
  4. Lee SB,Kim HU,Suh MC
    MYB94 and MYB96 Additively Activate Cuticular Wax Biosynthesis in Arabidopsis.
    Plant Cell Physiol., 2016. 57(11): p. 2300-2311
    [PMID:27577115]