PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim02g067230.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Dof

Protein Properties

Length: 468aa MW: 51282.7 Da PI: 4.5796

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim02g067230.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.2	4.2e-39	113	172	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+++cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s Sopim02g067230.0.1 113 PDKIIPCPRCNSMETKFCYFNNYNVNQPRHFCKSCQRYWTAGGTMRNVPVGAGRRKNKNS 172 7899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-30	110	170	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-31	115	171	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.574	117	171	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	119	155	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
MTDPAIKLFG RTIQLPDIPD SSGAQGDDSL PGDNNGEEDE EADKDDFGGN LDDDEEEMEI 60 LTGKELQDQN SEPTKTDSIK ELPVDNDCST RPSKSEEEQG EASNSQEKIL KKPDKIIPCP 120 RCNSMETKFC YFNNYNVNQP RHFCKSCQRY WTAGGTMRNV PVGAGRRKNK NSIPHYRQIS 180 VSETLSNAQT DYPNGIQQPI LAFGSPTPLC ESMASVLNIA DKTMHNCSQN GFHKPQEPGV 240 PVSYVVGDNG DDHSRRSSVT SANSEDEVNK TVPDLLKKNC HNFPPYMTYY PGAPWPYPCS 300 PVPWNSAIPP PGYCPPGFPM PFYPAASYWG YTVAGSWNVP WMSPATVSLI QTPTTSGPIS 360 PALGKHSRDE NIQKPLSSME EPSNESNPEK CLWVPKTLRI DDPGEAAKSS IWATLGIKHD 420 TVDSVGGSPF SAFQPKNDDN NRVSENSTVL QANPAALSRS VNFNESL*

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

MTDPAIKLFG RTIQLPDIPD SSGAQGDDSL PGDNNGEEDE EADKDDFGGN LDDDEEEMEI  60
LTGKELQDQN SEPTKTDSIK ELPVDNDCST RPSKSEEEQG EASNSQEKIL KKPDKIIPCP  120
RCNSMETKFC YFNNYNVNQP RHFCKSCQRY WTAGGTMRNV PVGAGRRKNK NSIPHYRQIS  180
VSETLSNAQT DYPNGIQQPI LAFGSPTPLC ESMASVLNIA DKTMHNCSQN GFHKPQEPGV  240
PVSYVVGDNG DDHSRRSSVT SANSEDEVNK TVPDLLKKNC HNFPPYMTYY PGAPWPYPCS  300
PVPWNSAIPP PGYCPPGFPM PFYPAASYWG YTVAGSWNVP WMSPATVSLI QTPTTSGPIS  360
PALGKHSRDE NIQKPLSSME EPSNESNPEK CLWVPKTLRI DDPGEAAKSS IWATLGIKHD  420
TVDSVGGSPF SAFQPKNDDN NRVSENSTVL QANPAALSRS VNFNESL*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975514	0.0	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004233366.1	0.0	cyclic dof factor 2
TrEMBL	A0A3Q7F0R9	0.0	A0A3Q7F0R9_SOLLC; Uncharacterized protein
STRING	Solyc02g067230.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	5e-90	cycling DOF factor 2