PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim02g067020.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 301aa MW: 34110.2 Da PI: 5.3546 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.7 | 1.6e-19 | 18 | 68 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++ GVr+++ +grWvAeI+d ++ r++lg+f+taeeAa+a+++a+ l+g Sopim02g067020.0.1 18 KKFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 68 589*******.7*********33....35**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.41E-32 | 18 | 75 | No hit | No description |
SuperFamily | SSF54171 | 6.41E-20 | 19 | 77 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 7.5E-38 | 19 | 82 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.1E-28 | 19 | 76 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.638 | 19 | 76 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.3E-14 | 19 | 68 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-8 | 20 | 31 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-8 | 42 | 58 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MGRKRKAEGL MKIQRPRKKF VGVRQRPSGR WVAEIKDTIQ KIRVWLGTFD TAEEAARAYD 60 EAACLLRGPN TRTNFWTSSS PSSNSALPQK ITKLLLSRLR EQNKSAAAAA ADSSSSTTSL 120 AEIDHQQQKQ QEKIGNRVVD FSDSLYTDYL NYPEDNVTEN NVIAPITREL TSIVQNQEIN 180 FQPVNNYEII EIGEAINIDV EDIESDIDFQ FRFSPFDLAE ELSMDFGEET SIVSEAMRRM 240 NYERKFSASL YAFNGITECL KLKMKSGGVT RSDQLSRIQN ACKRNLVKER ENEERNAGND 300 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-14 | 19 | 75 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC215360 | 0.0 | AC215360.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0025N15, complete sequence. | |||
GenBank | AC215414 | 0.0 | AC215414.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0190N21, complete sequence. | |||
GenBank | AC215433 | 0.0 | AC215433.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0280E02, complete sequence. | |||
GenBank | HG975514 | 0.0 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004233928.1 | 0.0 | ethylene-responsive transcription factor ERN1-like | ||||
TrEMBL | A0A3Q7F016 | 0.0 | A0A3Q7F016_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g067020.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4310 | 20 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 2e-22 | related to AP2 11 |