PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim02g064960.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | AP2 | ||||||||
Protein Properties | Length: 505aa MW: 57299.2 Da PI: 8.5128 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.2 | 3.5e-17 | 162 | 211 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Sopim02g064960.0.1 162 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 211 78*******************......55************************998 PP | |||||||
2 | AP2 | 44.4 | 4.2e-14 | 254 | 304 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ g +k+++lg f+t++eAa+a+++a+ k +g Sopim02g064960.0.1 254 SKYRGVTLHK-CGRWEAR---M---GqllGKKYVYLGLFDTENEAARAYDKAAIKCNG 304 89********.7******...5...334336**********************99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 8.5E-16 | 162 | 220 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.4E-9 | 162 | 211 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-31 | 163 | 225 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.649 | 163 | 219 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.61E-11 | 163 | 218 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.1E-17 | 163 | 219 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.66E-17 | 254 | 312 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 8.88E-26 | 254 | 312 | No hit | No description |
Pfam | PF00847 | 5.8E-10 | 254 | 304 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.9E-31 | 255 | 318 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.015 | 255 | 312 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-16 | 255 | 312 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-5 | 256 | 267 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-5 | 294 | 314 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 505 aa Download sequence Send to blast |
MWNLNNSPDH IKDYESEEGK GVGSISNSSS SAVEELYGSE EEDEFLEQNG LKGKKKKNIP 60 SKIFGFSMIA PPNNNNHNDD NLSSESEPPV TRQFFPVDES EIGSGNFNDR SCRFPRAHWA 120 GVKFYQPEPS ANSPALLGKG SELSQQVQPM KKSRRGPRSR SSQYRGVTFY RRTGRWESHI 180 WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR GMEADINFNL EDYEEDLKQM KNLTKEEFVH 240 VLRRQSTGFP RGSSKYRGVT LHKCGRWEAR MGQLLGKKYV YLGLFDTENE AARAYDKAAI 300 KCNGKDAVTN FDPCIYENEL NSSECSNKAA DHSLDLSLGS SSSKQNSREM EDTNKNQNYP 360 SIQFDVDWRH QGSKPKQPSP LDMEYGRRRN VYNETETLQL FSQTHLHSPG SFKTNSNEMQ 420 RFGQYMRAGD SQMIPPQFTS SNYQVQFPSS SNRRDTQQWQ SNTVPPPHLF ATAAASSGFP 480 QQILRHQNWP HKSGFNYSLT RPSN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes early floral meristem identity (PubMed:7919989). Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:1675158). Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower, by spatially controlling the expression domains of multiple floral organ identity genes (PubMed:1675158, PubMed:23034631). Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS (PubMed:1675158). Directly represses AGAMOUS by recruiting the transcriptional corepressor TOPLESS and the histone deacetylase HDA19 (PubMed:23034631). It is also required during seed development (PubMed:1675158). {ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:23034631, ECO:0000269|PubMed:7919989}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by the C class floral homeotic protein AGAMOUS in stamens and carpels. MicroRNA 172 (miRNA172) negatively regulates APETALA2 at the translational level and may modulate its expression pattern. Seems not to be influenced by jasmonate and Alternaria brassicicola. {ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:12893888, ECO:0000269|PubMed:14555699}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ586952 | 0.0 | HQ586952.1 Solanum lycopersicum AP2 transcription factor SlAP2b mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001233908.2 | 0.0 | APETALA2-like protein AP2b | ||||
Refseq | XP_010315852.1 | 0.0 | AP2 transcription factor SlAP2b isoform X1 | ||||
Swissprot | P47927 | 1e-117 | AP2_ARATH; Floral homeotic protein APETALA 2 | ||||
TrEMBL | A0A3Q7FKJ3 | 0.0 | A0A3Q7FKJ3_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g064960.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2019 | 23 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 1e-113 | AP2 family protein |