PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim02g062380.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GATA
Protein Properties Length: 290aa    MW: 32109.2 Da    PI: 7.0524
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim02g062380.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.59.1e-19213247135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         Cs+Cg+ kTplWR gp g+ktLCnaCG+++++ +l
  Sopim02g062380.0.1 213 CSHCGVQKTPLWRTGPLGEKTLCNACGVRFKSGRL 247
                         *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169926.3E-7121286IPR016679Transcription factor, GATA, plant
SMARTSM004013.4E-15207257IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.308210243IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.8E-15211245IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.25E-16212262No hitNo description
SuperFamilySSF577162.19E-14212270No hitNo description
PROSITE patternPS003440213238IPR000679Zinc finger, GATA-type
PfamPF003201.8E-16213247IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MKFYPHVVYM VPVCYVFGQV TQQIFKQKMD YSGNCQSFVS GDDLFVDELL DLSNGFSEDE  60
ENENENNNSS SSQQIKECDK ETVIIPSGKQ DFGSLLGCEI SLPGADLDNL EWLSHFVEDS  120
FSEYSLTYSA GNLPGKSLKL HSNVEIPVRE KPCFTAPLGA EREKNKPPSM SFSSSSSTTA  180
NSFWGELSVE NKPAARKPKK KMEKRIGIGA KQCSHCGVQK TPLWRTGPLG EKTLCNACGV  240
RFKSGRLLPE YRPASSPTFS TGLHSNSHRK VLEMRQKKET EPGPPVQSF*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233547.10.0GATA transcription factor 5
RefseqXP_010317231.10.0GATA transcription factor 5
SwissprotQ9FH575e-51GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A3Q7EYN40.0A0A3Q7EYN4_SOLLC; GATA transcription factor
STRINGSolyc02g062380.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11542481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.27e-52GATA transcription factor 5