PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim02g030210.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | AP2 | ||||||||
Protein Properties | Length: 352aa MW: 39637 Da PI: 6.5247 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 41.2 | 4.1e-13 | 5 | 56 | 9 | 55 |
AP2 9 dkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++gr++A+++d ++n+ k+ k+++lg ++ +e Aa+a++ a++k++g Sopim02g030210.0.1 5 HRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 56 899**********766644468557*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 17.082 | 1 | 64 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-13 | 2 | 65 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.96E-13 | 3 | 65 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.5E-8 | 5 | 56 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.0E-16 | 5 | 70 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MGIVHRWTGR YEAHLWDKST WNQNQNKKGK QVYLGAYDDE EAAARAYDLA ALKYWGPGTL 60 INFPVTDYTR DLEEMQNVSR EDYLASLRRK SGGFSRGISK YRPLSSRWDL QFGRVPGADY 120 FNSLHYGDNA TVDNEYIGGF CMDRKIDLSS YIKWWGGNKA RQTDSHLKIS EETKVGCPED 180 IDNELRASEL SIQQTEPYEM PRLGVYQENK NHKSSTLSAV SILSQSAAYK SLVEKVAKKK 240 EKVENDENEN KSTINRVDRG KMIEKSSPDS GSERLGAAFL NAGGLSINRN LHPLTPLLSG 300 PLLTNYNSID PLTDPVLWTS IVPNFHTGSS RTAEVHKSEA SSDYTLFQQE D* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975514 | 0.0 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004231573.1 | 0.0 | AP2-like ethylene-responsive transcription factor At2g41710 | ||||
Swissprot | Q8GWK2 | 1e-124 | AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710 | ||||
TrEMBL | A0A3Q7FH51 | 0.0 | A0A3Q7FH51_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g030210.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10734 | 19 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41710.1 | 1e-102 | AP2 family protein |