PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim02g024070.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HD-ZIP
Protein Properties Length: 852aa    MW: 93110 Da    PI: 5.3911
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim02g024070.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.93.1e-172280357
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                        k  ++t+eq+e+Le++++++++p+  +r++L ++     +++ +q+kvWFqNrR +ek+
  Sopim02g024070.0.1 22 KYVRYTPEQVEALERVYAECPKPTSLRRQQLIRESpilsNIEPKQIKVWFQNRRCREKQ 80
                        5679******************************9999*******************97 PP
2START167.78e-531703772204
                         HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EE CS
               START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..ga 90 
                         +aee+++e++ ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d + W ++++   +l vi +g  g+
  Sopim02g024070.0.1 170 IAEETLAEFLGKATGTAVDWVQLIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDCPSWYRDCRCLNVLSVIPTGngGT 259
                         68999*****************************************************.9999999999********************** PP

                         EEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
               START  91 lqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                         ++l++ +++a+++l+  Rdf+++Ry+ +l++g++vi+++S++  +  p+     s+vRae+lpSg+li+p+++g+s +++v+h+dl+++++
  Sopim02g024070.0.1 260 IELIYLQTYAPTTLATaRDFWTLRYTTSLEDGSLVICERSLTTATGGPTgppATSFVRAEMLPSGYLIRPCEGGGSMIHIVDHIDLDAWSV 350
                         ********************************************999998999************************************** PP

                         HHHHHHHHHHHHHHHHHHHHHHTXXXX CS
               START 178 hwllrslvksglaegaktwvatlqrqc 204
                         +++lr+l++s+ + ++kt++a+l++ +
  Sopim02g024070.0.1 351 PEVLRPLYESSKILAQKTTMAALRHIR 377
                         ***********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-18980IPR009057Homeodomain-like
PROSITE profilePS5007115.5321781IPR001356Homeobox domain
SMARTSM003891.2E-141985IPR001356Homeobox domain
SuperFamilySSF466891.24E-152184IPR009057Homeodomain-like
CDDcd000866.83E-162282No hitNo description
PfamPF000469.1E-152380IPR001356Homeobox domain
CDDcd146862.39E-674113No hitNo description
PROSITE profilePS5084825.731160388IPR002913START domain
CDDcd088754.81E-70164380No hitNo description
Gene3DG3DSA:3.30.530.201.0E-22168374IPR023393START-like domain
SMARTSM002345.0E-50169379IPR002913START domain
SuperFamilySSF559616.04E-37170381No hitNo description
PfamPF018522.2E-50170377IPR002913START domain
PfamPF086701.2E-46706850IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 852 aa     Download sequence    Send to blast
MALCLQRGEG ESGSKNDMDN GKYVRYTPEQ VEALERVYAE CPKPTSLRRQ QLIRESPILS  60
NIEPKQIKVW FQNRRCREKQ RKEASRLQTV NRKLSAMNKL LMEENDRLQK QVSQLVYENG  120
YMKQQINTVS STTTDTSCES VVVSGQQQRK NPTPQHPERD ANNPAGLLAI AEETLAEFLG  180
KATGTAVDWV QLIGMKPGPD SIGIVAVSRN CSGVAARACG LVSLEPTKVA EILKDCPSWY  240
RDCRCLNVLS VIPTGNGGTI ELIYLQTYAP TTLATARDFW TLRYTTSLED GSLVICERSL  300
TTATGGPTGP PATSFVRAEM LPSGYLIRPC EGGGSMIHIV DHIDLDAWSV PEVLRPLYES  360
SKILAQKTTM AALRHIRQIA QETSGEIQYS GGRQPAVLRA LSQRLCRGFN DAVNGFVDDG  420
WTIMDSDGVE DVTIAINSSS SKFLGSQYNT LSILPTFGGV LCARASMLLQ NVPPALLVRF  480
LREHRSEWAD YGVDAYSSAS LKASPYAVPC ARPGGFPSSQ VILPLAQTVE HEEFLEVVRL  540
EGPAFSPEDI ALSRDMYLLQ LCSGVDENAA GACAQLVFAP IDESFGDDAP LLPSGFRVIP  600
LEPKSDVPAA TRTLDLASTL EAGTGGSGTR PAGEIEAGNY NHRSVLTISF QFTFESHYQD  660
NVAAMARQYV RSIVGSVQRV AMAIAPSRLS SQLTPKSFPV SPEAVTLARW ISRSYRVNTG  720
GDLFQVDSQA GDAVLKELWH HSDAIMCCSV KMNASAVFTF ANQAGLDMLE TTLLALQDIM  780
LDKILDEAGR KVLLSEFSKI MQQGFAYLPA GICVSSMGRP ISYEQAIAWK VLNDDDSNHC  840
LAFMFINWSF V*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5603200.0AY560320.1 Nicotiana sylvestris PHAVOLUTA-like HD-ZIPIII protein mRNA, complete cds.
GenBankJQ6869320.0JQ686932.1 Nicotiana tabacum cultivar SR1 PHV HD-ZIPIII (PHV) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010315636.10.0homeobox-leucine zipper protein ATHB-14-like
SwissprotA2XK300.0HOX32_ORYSI; Homeobox-leucine zipper protein HOX32
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A3Q7EW760.0A0A3Q7EW76_SOLLC; Uncharacterized protein
STRINGSolyc02g024070.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]