PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopim02g014740.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | GeBP | ||||||||
Protein Properties | Length: 224aa MW: 26287.7 Da PI: 9.5775 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 71.3 | 1.9e-22 | 70 | 161 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 lf+++ws+eDe++lL+G+i+fk++t + ++ +++f f+ s+ ++ ++ ql eKirrLKk+++k ++ g+ s + h+ + f+l+ Sopim02g014740.0.1 70 LFSKVWSDEDEVSLLKGIIKFKEQTACEITQCMTEFRAFILPSLTLQPTRVQLREKIRRLKKRYEKTLAT---GN-SSNTDVHQLELFQLC 156 699****************************************************************999...44.47789999******* PP DUF573 93 kkiWg 97 ++iW Sopim02g014740.0.1 157 HIIWT 161 ****7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 4.7E-21 | 71 | 160 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 224 aa Download sequence Send to blast |
MTENSTTGAA NCSVEFVREE EEIVSNKRKN DDIDVTRFLY NDTPSDGYYQ EKTPSPKPKR 60 KMNLKSKPPL FSKVWSDEDE VSLLKGIIKF KEQTACEITQ CMTEFRAFIL PSLTLQPTRV 120 QLREKIRRLK KRYEKTLATG NSSNTDVHQL ELFQLCHIIW TQPPNSLLLK EKREDGLQVK 180 EKHNNPELEK QNIQVNEKKH NIPQKGQPEK QERKHNMRPI QQHX |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975514 | 0.0 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025884855.1 | 1e-164 | probable transcription factor At4g00610, partial | ||||
TrEMBL | A0A3Q7EVX9 | 1e-163 | A0A3Q7EVX9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g014740.1.1 | 1e-163 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13805 | 12 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G00390.1 | 5e-13 | DNA-binding storekeeper protein-related transcriptional regulator |