PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim02g005290.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GeBP
Protein Properties Length: 519aa    MW: 57645.4 Da    PI: 10.0051
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim02g005290.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57355.71.4e-1751139698
              DUF573   6 lwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 
                          ws+eDei++L+Gli+ k+++g +   d  ++y+ +k+s+  k ++   l +Ki+ L++K+k++ +k    +  + s +h+++ f ls ki
  Sopim02g005290.0.1  51 AWSKEDEITILKGLIKLKTEKG-KIRFDYVQLYDSIKQSLAHKsATPLHLQKKIKCLREKYKNNFNK----STRTWSIPHEEELFYLSDKI 136
                         4*********************.5577999**********8872556799*****************....7788999************* PP

              DUF573  96 Wgs 98 
                         Wg+
  Sopim02g005290.0.1 137 WGK 139
                         *95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.6E-1651138IPR007592Protein of unknown function DUF573
SuperFamilySSF545345.3E-25369516No hitNo description
Gene3DG3DSA:3.10.50.407.2E-24393516No hitNo description
PfamPF002541.6E-16426514IPR001179FKBP-type peptidyl-prolyl cis-trans isomerase domain
PROSITE profilePS5005918.607430517IPR001179FKBP-type peptidyl-prolyl cis-trans isomerase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006457Biological Processprotein folding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MENGVLQQGS IILTNSIVDS EIMQRRGKLM PRGGGGGSEK MIKKKSEKVG AWSKEDEITI  60
LKGLIKLKTE KGKIRFDYVQ LYDSIKQSLA HKSATPLHLQ KKIKCLREKY KNNFNKSTRT  120
WSIPHEEELF YLSDKIWGKD DHQQLKIPSS SLMNQQQLTI PSSSLMNQQH LTLPSSSLMN  180
QQQLTLPSSS LMNQQQLTLP SSSLMNQQFT ISDTTFVGDL GLALTTMSRN QSNQMQVALQ  240
QFKLVSQSLS IRKSYANQIL HAHITLKEEG LSEQKIARSY FDTKIQHAQL VSDAYNASHG  300
FGGSLVNIVS DCVLKEDATK VMNEGSCPPA TIGCRKPING KPSGTSLKSV REMCHSQERK  360
KKKKRKIENP EKHRDSSIQS QLEMENQSAV AYAKINYESA KSSDIHTLSD GLTVEVMVKG  420
KADGKVASLG KQIKIHFIAK LRDTGCIVGS TIGAAPHQFC LGYEKVLKGL NIGIEGMHVG  480
EKRRLTIPPS LGPGRKAKPP IMPDSWLLYE VELVDICE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3uqa_A2e-1438251679209Ubiquitin-like protein SMT3, Peptidyl-prolyl cis-trans isomerase
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1357363ERKKKKK
2359365KKKKKRK
3360365KKKKRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755140.0HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004231466.10.0uncharacterized protein LOC101248824 isoform X2
TrEMBLA0A3Q7FFG30.0A0A3Q7FFG3_SOLLC; Peptidylprolyl isomerase
STRINGSolyc02g005290.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1376078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.12e-09DNA-binding storekeeper protein-related transcriptional regulator