PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim01g112320.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

FAR1

Protein Properties

Length: 782aa MW: 89496 Da PI: 6.1949

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim01g112320.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	99.6	3.2e-31	74	165	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYn+YA++vGFs+r+s+s++s+++g i++r fvC keg+r+ ++k+ +++ +r+r++tr+gCka l vk +++g w+v+++++eHnHel+ Sopim01g112320.0.1 74 FYNSYARRVGFSTRVSSSRRSRKDGAIIQRSFVCAKEGFRNLNEKRtkDREIKRPRTVTRVGCKAALSVKIQDSGMWVVSNFVKEHNHELV 164 9*************************************998888545677889*********************************8 PP FAR1 91 p 91 p Sopim01g112320.0.1 165 P 165 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-29	74	165	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.4E-32	286	378	IPR018289	MULE transposase domain
Pfam	PF04434	5.4E-12	554	600	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.263	566	602	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.2E-9	577	604	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 782 aa Download sequence Send to blast
MDNEVIEFDI GLGGGGGSED GDGDDVLDEG NVANCSLVID GNVATVRSYS PQGDLDLEPY 60 EGMEFESEEA AKAFYNSYAR RVGFSTRVSS SRRSRKDGAI IQRSFVCAKE GFRNLNEKRT 120 KDREIKRPRT VTRVGCKAAL SVKIQDSGMW VVSNFVKEHN HELVPPDQVH CLRSHRQISG 180 PAKTLIDTLQ AAGMGPRRIM SALIKEYGGI SKVGFTEVDC RNYMRNNRQR SMEGDIQLLL 240 DYLKQMNIQN AGFFYAVQGD EDQCSGNVFW ADSKARANYN YFGDTVTFDT TYRSNRYRLP 300 FAPFTGVNHH GQPVLFGCAF LINESEASFI WLFKTWLAAM SGQPPLSMTT DHDAVIRSAI 360 MQVFPETRHR FCKWHIFKKC QEKLSHVFLE HPNFEADFHK CVNLTESTEE FESCWLSLVD 420 KYELRDHDWL QVIYLDRTQW VQVYLRDAFF AEMSITQRSD SMNSYFDGYV NASTNLNQFF 480 KLYEKAVESR TEKEVKADYD TMSTFPVLKT PSPMEKQASE VYTKKLFMRF QEELVATLTF 540 MANKVEDDGL VTTYQVAKFG DDHSAYYVRF NVLEMKATCS CQMFEFSGLL CRHVLAVFRV 600 TNVLTLPSHY ILKRWSRSAK SSVALEDRVA DVINYYLESH TVRYNMLRHE AFKFVEEGAE 660 TVDSYTVAMA ALEEASKKIF LAVKHDGRIS IVNGHCRENL TRNGVHANYN SEDEQRSLAC 720 PLSEDDMDTK IQELSYQLDC ATQKCEVYRA NLYSVLKDID DHKQQLSINV QRIKHSLKDD 780 L*

Sequence ? help Back to Top

Protein Sequence Length: 782 aa Download sequence Send to blast

MDNEVIEFDI GLGGGGGSED GDGDDVLDEG NVANCSLVID GNVATVRSYS PQGDLDLEPY  60
EGMEFESEEA AKAFYNSYAR RVGFSTRVSS SRRSRKDGAI IQRSFVCAKE GFRNLNEKRT  120
KDREIKRPRT VTRVGCKAAL SVKIQDSGMW VVSNFVKEHN HELVPPDQVH CLRSHRQISG  180
PAKTLIDTLQ AAGMGPRRIM SALIKEYGGI SKVGFTEVDC RNYMRNNRQR SMEGDIQLLL  240
DYLKQMNIQN AGFFYAVQGD EDQCSGNVFW ADSKARANYN YFGDTVTFDT TYRSNRYRLP  300
FAPFTGVNHH GQPVLFGCAF LINESEASFI WLFKTWLAAM SGQPPLSMTT DHDAVIRSAI  360
MQVFPETRHR FCKWHIFKKC QEKLSHVFLE HPNFEADFHK CVNLTESTEE FESCWLSLVD  420
KYELRDHDWL QVIYLDRTQW VQVYLRDAFF AEMSITQRSD SMNSYFDGYV NASTNLNQFF  480
KLYEKAVESR TEKEVKADYD TMSTFPVLKT PSPMEKQASE VYTKKLFMRF QEELVATLTF  540
MANKVEDDGL VTTYQVAKFG DDHSAYYVRF NVLEMKATCS CQMFEFSGLL CRHVLAVFRV  600
TNVLTLPSHY ILKRWSRSAK SSVALEDRVA DVINYYLESH TVRYNMLRHE AFKFVEEGAE  660
TVDSYTVAMA ALEEASKKIF LAVKHDGRIS IVNGHCRENL TRNGVHANYN SEDEQRSLAC  720
PLSEDDMDTK IQELSYQLDC ATQKCEVYRA NLYSVLKDID DHKQQLSINV QRIKHSLKDD  780
L*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC239570	0.0	AC239570.7 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-119i16 map 1, complete sequence.
GenBank	AC240217	0.0	AC240217.1 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-9a8 map 1, complete sequence.
GenBank	AC246696	0.0	AC246696.7 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-58a15 map 1, complete sequence.
GenBank	HG975513	0.0	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004231108.1	0.0	protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A3Q7EV48	0.0	A0A3Q7EV48_SOLLC; Uncharacterized protein
STRING	Solyc01g112320.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]