PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g110180.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family DBB
Protein Properties Length: 204aa    MW: 22621.1 Da    PI: 5.9641
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g110180.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.36.4e-08435536
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg 36
                         C+ ++++e++ +C  ++  lC++C  + H+ 
  Sopim01g110180.0.1  4 QCDVCDKEEASVYCSADEATLCQSCDYQVHHA 35
                        7***************************9743 PP
2zf-B_box28.92.3e-095592338
            zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                         + C+ ++e ++ lfC++++  lC++C l +Hk   Ht
  Sopim01g110180.0.1 55 SPLCDICQERRALLFCKEDRAILCKECDLPIHKAneHT 92
                        689*****************************888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.907147IPR000315B-box-type zinc finger
CDDcd000218.94E-6333No hitNo description
PfamPF006432.4E-6434IPR000315B-box-type zinc finger
SMARTSM003361.5E-5447IPR000315B-box-type zinc finger
SMARTSM003364.7E-1553100IPR000315B-box-type zinc finger
PROSITE profilePS5011910.38153100IPR000315B-box-type zinc finger
PfamPF006431.0E-75593IPR000315B-box-type zinc finger
CDDcd000213.60E-1056100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0080167Biological Processresponse to karrikin
GO:1900458Biological Processnegative regulation of brassinosteroid mediated signaling pathway
GO:2000306Biological Processpositive regulation of photomorphogenesis
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MKIQCDVCDK EEASVYCSAD EATLCQSCDY QVHHANKLAS KHLRFSLIHP SFKDSPLCDI  60
CQERRALLFC KEDRAILCKE CDLPIHKANE HTKKHNRFLL SGVQLSSDIL ASNYNNNQNS  120
ISPAGSAASN AGTNNFKALS GNFGMKSNSI SSTTESTHNY FHVDYVQEGS VSTSSISEYL  180
TETLPGWHVE DFLEYPSSSS YEF*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269|PubMed:22535582}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025884541.11e-150B-box zinc finger protein 20 isoform X2
SwissprotQ0IGM71e-71BBX20_ARATH; B-box zinc finger protein 20
TrEMBLA0A3Q7ETG91e-149A0A3Q7ETG9_SOLLC; Uncharacterized protein
STRINGSolyc01g110180.2.11e-150(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14632364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39070.11e-70DBB family protein
Publications ? help Back to Top
  1. Wei CQ, et al.
    The Arabidopsis B-box protein BZS1/BBX20 interacts with HY5 and mediates strigolactone regulation of photomorphogenesis.
    J Genet Genomics, 2016. 43(9): p. 555-563
    [PMID:27523280]
  2. Thussagunpanit J, et al.
    Involvement of STH7 in light-adapted development in Arabidopsis thaliana promoted by both strigolactone and karrikin.
    Biosci. Biotechnol. Biochem., 2017. 81(2): p. 292-301
    [PMID:27858514]