PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim01g109240.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

LBD

Protein Properties

Length: 122aa MW: 14015.2 Da PI: 8.2656

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim01g109240.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126	1.9e-39	5	105	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk lrrkC+++C++ pyfp ++p++f +vh+++Gasnv k+l++++e++r d+++sl+yeA +r+++PvyG+vg+i+ l++++ +++ Sopim01g109240.0.1 5 RCAACKQLRRKCPSNCIFLPYFPPNNPQRFLYVHRIYGASNVGKMLQQVEEHQRGDVADSLYYEAYCRIKNPVYGCVGIITVLHEEIYHVQ 95 6**************************************************************************************** PP DUF260 92 aelallkeel 101 +la++++++ Sopim01g109240.0.1 96 CQLAKVQAQI 105 ****9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.292	4	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.3E-39	5	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 122 aa Download sequence Send to blast
MSSTRCAACK QLRRKCPSNC IFLPYFPPNN PQRFLYVHRI YGASNVGKML QQVEEHQRGD 60 VADSLYYEAY CRIKNPVYGC VGIITVLHEE IYHVQCQLAK VQAQIDLLYQ NGLYTLDPSF 120 Y*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-35	2	105	8	111	LOB family transfactor Ramosa2.1
5ly0_B	2e-35	2	105	8	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975513	1e-116	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016582044.1	5e-77	PREDICTED: LOB domain-containing protein 24-like
Swissprot	P59468	7e-43	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A1U8HND5	1e-75	A0A1U8HND5_CAPAN; LOB domain-containing protein 24-like
STRING	Solyc01g109240.1.1	5e-86	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5277	20	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	3e-45	LOB domain-containing protein 24