PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g106030.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GATA
Protein Properties Length: 327aa    MW: 35018.7 Da    PI: 6.3741
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g106030.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.91.9e-15244279134
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                         C++C+ ++  Tp++Rrgp g+++LCnaCGl+++ kg
  Sopim01g106030.0.1 244 CRHCNISSksTPMMRRGPAGPRSLCNACGLKWANKG 279
                         *****99999**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.818109144IPR010399Tify domain
SMARTSM009793.6E-12109144IPR010399Tify domain
PfamPF062001.0E-12112143IPR010399Tify domain
PROSITE profilePS5101713.126176218IPR010402CCT domain
PfamPF062034.9E-16176218IPR010402CCT domain
SMARTSM004012.7E-11238291IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-11239289No hitNo description
Gene3DG3DSA:3.30.50.103.2E-14242285IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.09E-13243291No hitNo description
PROSITE patternPS003440244271IPR000679Zinc finger, GATA-type
PfamPF003201.8E-13244279IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.59248295IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MAEANRRANM YGRETMNAAL HQDRHQQTQI DDDDDDDVVA AVGGGGSGGG GIESMDNPTP  60
HIRYDQHHHS HSHALHNGGA GGSMEMNGVE GVSHNALYGP PSEIVPTAGS GASDQLTLSF  120
QGEVYVFDAV SPEKVQAVLL LLGGYEVPPG IPAVNVVPQS QRASGDFPGR LNQPERAASL  180
NRFREKRKER CFDKKIRYTV RKEVAMRMQR KKGQFTSAKS IPDEVGSSAD WNEGSGQEEQ  240
ETSCRHCNIS SKSTPMMRRG PAGPRSLCNA CGLKWANKGI LRDLSKVPAP GTQDQTAKPG  300
EQSHGEPNGS DDMAAIITPD DNNPVG*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2331280.0AC233128.10 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-245n21 map 1, complete sequence.
GenBankAC2408660.0AC240866.5 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-210o18 map 1, complete sequence.
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004230570.10.0GATA transcription factor 24
SwissprotQ8GXL73e-78GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A3Q7FBQ20.0A0A3Q7FBQ2_SOLLC; Uncharacterized protein
STRINGSolyc01g106030.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26722348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.29e-81ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]