PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopim01g105800.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 280aa MW: 32104.7 Da PI: 9.1124 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 82.5 | 2.7e-26 | 73 | 123 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr g++KKA+ELS+LCda++ +i+fs tgkl+eyss Sopim01g105800.0.1 73 KKIDNLTARQVTFSKRRRGLFKKAQELSTLCDADIGLIVFSATGKLFEYSS 123 68***********************************************96 PP | |||||||
2 | K-box | 42.8 | 2.3e-15 | 148 | 238 | 9 | 99 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 l++++ s ++ +a L++ + re+R+l Ge+L+ L l eL++Le+ +e +++++ + K + ++++i+ l+kke +lqeen +L+k+ + Sopim01g105800.0.1 148 LHSSNILSEKKTHAMLNRDFVEKNRELRQLHGEELQGLGLDELMKLEKLVEGGISRVLKIKGDKFMKEISSLKKKEAKLQEENSQLKKQSQ 238 6777777888888888888888899**************************************************************9976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 7.7E-39 | 65 | 124 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 28.777 | 65 | 125 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.4E-26 | 67 | 87 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.87E-36 | 67 | 140 | No hit | No description |
SuperFamily | SSF55455 | 3.14E-29 | 67 | 145 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 67 | 121 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.9E-24 | 74 | 121 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.4E-26 | 87 | 102 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.4E-26 | 102 | 123 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 11.911 | 153 | 243 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 8.0E-13 | 157 | 236 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 280 aa Download sequence Send to blast |
MEQITIQLKS SNSNSHEEIQ LLLCNQKYPN YYFFSFYCNN IPFFSFFSSQ LQISSPFLAN 60 FSKEMVRQKI QIKKIDNLTA RQVTFSKRRR GLFKKAQELS TLCDADIGLI VFSATGKLFE 120 YSSSSMMQLI EKHKMQSERD GMDNPEQLHS SNILSEKKTH AMLNRDFVEK NRELRQLHGE 180 ELQGLGLDEL MKLEKLVEGG ISRVLKIKGD KFMKEISSLK KKEAKLQEEN SQLKKQSQAR 240 LNEEGQNVIE QGHSADSITN NRSLVNDSDT SLKLCLAFP* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-17 | 65 | 133 | 1 | 69 | MEF2C |
5f28_B | 3e-17 | 65 | 133 | 1 | 69 | MEF2C |
5f28_C | 3e-17 | 65 | 133 | 1 | 69 | MEF2C |
5f28_D | 3e-17 | 65 | 133 | 1 | 69 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription repressor that inhibit floral transition in the autonomous flowering pathway, independent of photoperiod and temperature. Acts in a dosage-dependent manner. Together with AGL24 and AP1, controls the identity of the floral meristem and regulates expression of class B, C and E genes. Promotes EFM expression to suppress flowering (PubMed:25132385). {ECO:0000269|PubMed:16679456, ECO:0000269|PubMed:18694458, ECO:0000269|PubMed:19656343, ECO:0000269|PubMed:25132385}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by the floral homeotic genes AP1 and SEP3 in emerging floral meristems. Up-regulated by HUA2. {ECO:0000269|PubMed:15659097, ECO:0000269|PubMed:17428825, ECO:0000269|PubMed:18694458}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AF008652 | 0.0 | AF008652.1 Solanum tuberosum MADS transcriptional factor (Stmads11) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004230624.1 | 1e-153 | MADS-box protein SVP | ||||
Swissprot | Q9FVC1 | 1e-61 | SVP_ARATH; MADS-box protein SVP | ||||
TrEMBL | M1D727 | 1e-146 | M1D727_SOLTU; Uncharacterized protein | ||||
STRING | Solyc01g105800.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA938 | 23 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G22540.1 | 6e-52 | MIKC_MADS family protein |