PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopim01g103870.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 126aa MW: 14435.6 Da PI: 9.5372 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 43.2 | 5.1e-14 | 16 | 62 | 4 | 50 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 + k+n++ ++ R++ i K EL +LCd++v+ +i +++ +l++++ Sopim01g103870.0.1 16 KKKTNNSKSYQVRKECIKRKSMELATLCDIKVCTVITGPNRELQTWP 62 5799******************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 8.37E-15 | 11 | 88 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 8.858 | 16 | 61 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.3E-9 | 17 | 61 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 126 aa Download sequence Send to blast |
MADEDQSKKG EEDQRKKKTN NSKSYQVRKE CIKRKSMELA TLCDIKVCTV ITGPNRELQT 60 WPDNLNACKE VLDIYSQNLK PEKKHKQEDK DLPTLVESKL AAVNRRICFL ENKNVADKGK 120 GKRIE* |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC246105 | 0.0 | AC246105.3 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone slm-15l21 map 1, complete sequence. | |||
GenBank | HG975513 | 0.0 | HG975513.1 Solanum lycopersicum chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015082095.2 | 2e-78 | agamous-like MADS-box protein AGL75 | ||||
TrEMBL | M1CBP7 | 7e-65 | M1CBP7_SOLTU; Uncharacterized protein | ||||
STRING | Solyc01g103870.1.1 | 2e-86 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3723 | 16 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G39810.1 | 3e-10 | AGAMOUS-like 98 |