PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g102740.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 414aa    MW: 46927.9 Da    PI: 6.6308
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g102740.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.65.9e-50511762128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                         +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d+ +
  Sopim01g102740.0.1  51 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMI 140
                         79***************************.89***************8778899************************************* PP

                 NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++++ +glkktLvfy+g+apkg +++W+m+eyrl
  Sopim01g102740.0.1 141 RTENSRSIGLKKTLVFYSGKAPKGIRSSWIMNEYRL 176
                         **********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100556.00250197IPR003441NAC domain
SuperFamilySSF1019411.11E-5550196IPR003441NAC domain
PfamPF023654.8E-2552176IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MAIVPFITTN MSQSQQQHQQ QQDDDDNNNI NNTIKGDDND DDDDHEHDMV MPGFRFHPTE  60
EELVEFYLRR KVEGKRFNVE LITFLDLYRY DPWELPALAA IGEKEWYFYV PRDRKYRNGD  120
RPNRVTTSGY WKATGADRMI RTENSRSIGL KKTLVFYSGK APKGIRSSWI MNEYRLPHHE  180
TERLQKAEIS LCRVYKRAGV EDHPSLPRSL LTTRASSSSS SRGTTPIKKQ QVAQQDSSLI  240
SPLYLGQSSQ QQIDEKLSTE TSASSTSTDH HHHHQHHVAT SLGLNSLSNS YTNIALDPIG  300
SAVNITTSTL TPFTSLVATT NNTTDDLHRL INLDQVVAFH NNQHHFHPPP GVVPQQYPPP  360
LLLQQPQSLL HQGSLPSSAA AAFSDRLWEW NSINQTDGSC KDDHYDQGNN PFK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-565219719165NO APICAL MERISTEM PROTEIN
1ut4_B6e-565219719165NO APICAL MERISTEM PROTEIN
1ut7_A6e-565219719165NO APICAL MERISTEM PROTEIN
1ut7_B6e-565219719165NO APICAL MERISTEM PROTEIN
4dul_A6e-565219719165NAC domain-containing protein 19
4dul_B6e-565219719165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00257DAPTransfer from AT2G02450Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2462550.0AC246255.2 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-65j3 map 1, complete sequence.
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004230395.10.0NAC domain-containing protein 35 isoform X2
SwissprotQ9ZVP81e-115NAC35_ARATH; NAC domain-containing protein 35
TrEMBLA0A3Q7F9J50.0A0A3Q7F9J5_SOLLC; Uncharacterized protein
STRINGSolyc01g102740.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38882446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.21e-109NAC domain containing protein 35
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Okajima K
    Molecular mechanism of phototropin light signaling.
    J. Plant Res., 2016. 129(2): p. 149-57
    [PMID:26815763]
  3. Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M
    Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii.
    J Phys Chem B, 2018. 122(6): p. 1801-1815
    [PMID:29355019]